91c925b21b7c9c02bcc035c75d463162cd7e7d97
angie
  Mon Dec 5 08:08:23 2011 -0800
Oops, forgot to run 'make test' before committing, and overlookeda test program...

diff --git src/lib/tests/vcfParseTest.c src/lib/tests/vcfParseTest.c
index c414f40..c6a5fd1 100644
--- src/lib/tests/vcfParseTest.c
+++ src/lib/tests/vcfParseTest.c
@@ -15,31 +15,31 @@
   "usage:\n"
   "   vcfParseTest fileOrUrl.vcf.gz seqName start end\n"
   "\n"
   "fileOrUrl.vcf.gz needs to have been compressed by tabix, and index file\n"
   "fileOrUrl.vcf.gz.tbi must exist.\n"
   );
 }
 
 static struct optionSpec options[] = {
    {NULL, 0},
 };
 
 void vcfParseTest(char *fileOrUrl, char *seqName, int start, int end)
 /* vcfParseTest - Parse VCF header and data lines in given position range.. */
 {
-struct vcfFile *vcff = vcfTabixFileMayOpen(fileOrUrl, seqName, start, end, 100);
+struct vcfFile *vcff = vcfTabixFileMayOpen(fileOrUrl, seqName, start, end, 100, -1);
 if (vcff == NULL)
     errAbort("Failed to parse \"%s\" and/or its index file \"%s.tbi\"", fileOrUrl, fileOrUrl);
 int recCount = slCount(vcff->records);
 printf("Finished parsing \"%s\" items in %s:%d-%d, got %d data rows\n",
        fileOrUrl, seqName, start+1, end, recCount);
 if (recCount > 0)
     printf("First (up to) 100 rows in range:\n");
 int i = 0;
 struct vcfRecord *rec = vcff->records;
 while (rec != NULL && i < 100)
     {
     printf("%s\t%d\t%d\t%s:%s/%s\t%s\n",
 	   rec->chrom, rec->chromStart, rec->chromEnd,
 	   rec->name, rec->alleles[0], rec->alleles[1], rec->qual);
     rec = rec->next;