a44421a79fb36cc2036fe116b97ea3bc9590cd0c braney Fri Dec 2 09:34:39 2011 -0800 removed rcsid (#295) diff --git src/hg/patCount/patCount.c src/hg/patCount/patCount.c index 916a0c7..cf4d3ce 100644 --- src/hg/patCount/patCount.c +++ src/hg/patCount/patCount.c @@ -1,25 +1,24 @@ /* PatCount - Counts up the number of occurences of each * oligo of a fixed size (up to 13) in input sequence. * Writes all patterns that are overrepresented according * to a threshold to output. */ #include "common.h" #include "dnaseq.h" #include "fa.h" #include "sig.h" -static char const rcsid[] = "$Id: patCount.c,v 1.5 2006/06/30 15:29:28 angie Exp $"; void usage() { errAbort("patCount - counts up the number of occurences of each\n" "oligo of a fixed size (up to 13) in input. Writes out\n" "all patterns that are overrepresented by at least factor\n" "to output, which is a binary .ooc file used by patSpace\n" "nucleotide homology algorithms.\n" "usage:\n" " patCount out.ooc oligoSize overFactor faFiles(s)\n" "example:\n" " patCount hgt.ooc 13 6 hgt1.fa hgt2.fa hgt3.fa"); } unsigned long powerOfFour(int oligoSize)