a44421a79fb36cc2036fe116b97ea3bc9590cd0c
braney
  Fri Dec 2 09:34:39 2011 -0800
removed rcsid (#295)
diff --git src/hg/pslCDnaGenomeMatch/pslCDnaGenomeMatch.c src/hg/pslCDnaGenomeMatch/pslCDnaGenomeMatch.c
index 652ffe3..6d14745 100644
--- src/hg/pslCDnaGenomeMatch/pslCDnaGenomeMatch.c
+++ src/hg/pslCDnaGenomeMatch/pslCDnaGenomeMatch.c
@@ -16,31 +16,30 @@
 #include "options.h"
 #include "genePred.h"
 #include "genePredReader.h"
 #include "dystring.h"
 #include "pseudoGeneLink.h"
 #include "verbose.h"
 #include "nibTwo.h"
 #include "bed.h"
 #include "snp125.h"
 #include "pipeline.h"
 #define MINDIFF 5
 #define MAXLOCI 2048
 #define NOVALUE 10000  /* loci index when there is no genome base for that mrna position */
 #include "mrnaMisMatch.h"
 #define NOTALIGNEDFACTOR 8 /* unaligned bases divided by this factor reduce score */
-//static char const rcsid[] = "$Id: pslCDnaGenomeMatch.c,v 1.28 2009/12/01 06:53:14 baertsch Exp $";
 static char na[3] = "NA";
 struct axtScoreScheme *ss = NULL; /* blastz scoring matrix */
 struct hash *snpHash = NULL, *mrnaHash = NULL, *faHash = NULL, *tHash = NULL, *species1Hash = NULL, *species2Hash = NULL;
 int maxGap = 100;
 int minDiff = MINDIFF;
 int notAlignPenalty = NOTALIGNEDFACTOR;
 int aliCount = 0; /* number of alignments read */
 int mrnaCount = 0; /* number of mrna read */
 int filterCount = 0; /* number of mrna where best hit can be determined  */
 int outputCount = 0; /* number of alignments written */
 int verbosity = 1;
 int lociCounter = 0;
 bool passthru = FALSE;
 bool computeSS = FALSE;
 struct dlList *fileCache = NULL;