a44421a79fb36cc2036fe116b97ea3bc9590cd0c
braney
  Fri Dec 2 09:34:39 2011 -0800
removed rcsid (#295)
diff --git src/hg/pslPseudo/pslPseudo.c src/hg/pslPseudo/pslPseudo.c
index eaa5a76..7c5de19 100644
--- src/hg/pslPseudo/pslPseudo.c
+++ src/hg/pslPseudo/pslPseudo.c
@@ -27,31 +27,30 @@
 #include "chainNet.h"
 //#include "scoreWindow.h" TODO fix this
 #include "verbose.h"
 
 #define ScoreNorm 3
 #define BEDCOUNT 3
 #define POLYASLIDINGWINDOW 10
 #define POLYAREGION 70
 #define INTRONMAGIC 10 /* allow more introns if lots of exons covered - if (exonCover - intronCount > INTRONMAGIC) */
 
 /* label for classification stored in pseudoGeneLink table */
 #define PSEUDO 1
 #define NOTPSEUDO -1
 #define EXPRESSED -2
 
-static char const rcsid[] = "$Id: pslPseudo.c,v 1.49 2006/05/28 23:32:26 baertsch Exp $";
 
 char *db;
 char *nibDir;
 char *mrnaSeq;
 int verbosity = 1;
 float minAli = 0.98;
 float maxRep = 0.60;
 float minAliPseudo = 0.60;
 float nearTop = 0.005;
 float repsPerIntron = 0.7;
 float splicedOverlapRatio = 0.1;
 float minCover = 0.50;
 float minCoverPseudo = 0.01;
 int maxBlockGap = 50;
 int intronSlop = 35;
@@ -2575,31 +2574,30 @@
 fclose(axtFile);
 verbose(1,"Processed %d alignments\n", aliCount);
 }
 
 int main(int argc, char *argv[])
 /* Process command line. */
 {
 //struct genePredReader *gprKg;
 
 optionInit(&argc, argv, optionSpecs);
 if (argc != 19)
     usage(argc);
 verboseSetLogFile("stdout");
 verbosity = optionInt("verbose", 1);
 verboseSetLevel(verbosity);
-verbose(1,"version is %s\n",rcsid);
 ss = axtScoreSchemeDefault();
 /* smaller gap to handle spliced introns */
 ss->gapExtend = 5;
 fileHash = newHash(0);  
 tHash = newHash(20);  /* seqFilePos value. */
 qHash = newHash(20);  /* seqFilePos value. */
 fileCache = newDlList();
 db = cloneString(argv[1]);
 nibDir = cloneString(argv[11]);
 minAli = optionFloat("minAli", minAli);
 maxRep = optionFloat("maxRep", maxRep);
 minAliPseudo = optionFloat("minAliPseudo", minAliPseudo);
 nearTop = optionFloat("nearTop", nearTop);
 splicedOverlapRatio = optionFloat("splicedOverlapRatio", splicedOverlapRatio);
 minCover = optionFloat("minCover", minCover);