a44421a79fb36cc2036fe116b97ea3bc9590cd0c braney Fri Dec 2 09:34:39 2011 -0800 removed rcsid (#295) diff --git src/jkOwnLib/crudeali.c src/jkOwnLib/crudeali.c index 2ffa027..67d06f2 100644 --- src/jkOwnLib/crudeali.c +++ src/jkOwnLib/crudeali.c @@ -2,31 +2,30 @@ * This has two modes - a 16-base at a time and a 6 base at a time * which basically is for cDNA alignments and genomic/genomic * alignments. The six base at a time doesn't use six contigious * bases, but rather 8 bases in a row with the two in "wobble * positions" masked out. It ends up making things more * sensitive, and, fortunately, the whole thing still fits in * a single 16 bit word. */ /* Copyright 2000-2003 Jim Kent. All rights reserved. */ #include "common.h" #include "dnautil.h" #include "nt4.h" #include "dnaseq.h" #include "crudeali.h" -static char const rcsid[] = "$Id: crudeali.c,v 1.5 2006/05/09 01:05:55 markd Exp $"; #define maxTileSize 16 #define wobbleMask 0xF3CF static int caTileSize = 16; static boolean caIsCdna = TRUE; struct crudeHit /* A tileSize exact match between probe and target. */ { int probeOffset; int targetOffset; boolean isLumped; };