a44421a79fb36cc2036fe116b97ea3bc9590cd0c braney Fri Dec 2 09:34:39 2011 -0800 removed rcsid (#295) diff --git src/lib/axtAffine.c src/lib/axtAffine.c index 48e352b..27e184f 100644 --- src/lib/axtAffine.c +++ src/lib/axtAffine.c @@ -1,25 +1,24 @@ /* axtAffine - do alignment of two (shortish) sequences with * affine gap scoring, and return the result as an axt. * This file is copyright 2000-2004 Jim Kent, but license is hereby * granted for all use - public, private or commercial. */ #include "common.h" #include "pairHmm.h" #include "axt.h" -static char const rcsid[] = "$Id: axtAffine.c,v 1.7 2005/04/10 14:41:20 markd Exp $"; boolean axtAffineSmallEnough(double querySize, double targetSize) /* Return TRUE if it is reasonable to align sequences of given sizes * with axtAffine. */ { return targetSize * querySize <= 1.0E8; } static void affineAlign(char *query, int querySize, char *target, int targetSize, struct axtScoreScheme *ss, struct phmmMatrix **retMatrix, struct phmmAliPair **retPairList, int *retScore) /* Use dynamic programming to do alignment including affine gap * scores. */