a44421a79fb36cc2036fe116b97ea3bc9590cd0c braney Fri Dec 2 09:34:39 2011 -0800 removed rcsid (#295) diff --git src/lib/chainConnect.c src/lib/chainConnect.c index ce166df..3e513dc 100644 --- src/lib/chainConnect.c +++ src/lib/chainConnect.c @@ -1,25 +1,24 @@ /* chainConnect - Stuff to cope with connect costs and overlaps when * making chains. This works closely with the chainBlock module. */ #include "common.h" #include "chain.h" #include "axt.h" #include "gapCalc.h" #include "chainConnect.h" -static char const rcsid[] = "$Id: chainConnect.c,v 1.3 2005/08/07 23:25:26 baertsch Exp $"; double chainScoreBlock(char *q, char *t, int size, int matrix[256][256]) /* Score block through matrix. */ { double score = 0; int i; for (i=0; i<size; ++i) score += matrix[(int)q[i]][(int)t[i]]; return score; } double chainCalcScore(struct chain *chain, struct axtScoreScheme *ss, struct gapCalc *gapCalc, struct dnaSeq *query, struct dnaSeq *target) /* Calculate chain score freshly. */ {