a44421a79fb36cc2036fe116b97ea3bc9590cd0c braney Fri Dec 2 09:34:39 2011 -0800 removed rcsid (#295) diff --git src/lib/pairHmm.c src/lib/pairHmm.c index e7c9464..67eda43 100644 --- src/lib/pairHmm.c +++ src/lib/pairHmm.c @@ -1,26 +1,25 @@ /* pairHmm - stuff to help implement pairwise hidden markov models, * which are useful ways of aligning two sequences. * * This file is copyright 2000-2004 Jim Kent, but license is hereby * granted for all use - public, private or commercial. */ #include "common.h" #include "axt.h" #include "pairHmm.h" -static char const rcsid[] = "$Id: pairHmm.c,v 1.5 2005/04/11 06:43:58 kent Exp $"; UBYTE phmmNullMommy = 0; /* mommy value for orphans.... */ void phmmUnpackMommy(UBYTE mommy, int *retStateIx, int *retQoff, int *retToff) /* Unpack state, query, and target offset. */ { *retStateIx = (mommy&31); *retQoff = -((mommy&32)>>5); *retToff = -((mommy&64)>>6); } struct phmmMatrix *phmmMatrixNew(int stateCount, char *query, int querySize, char *target, int targetSize) /* Allocate all memory required for an phmmMatrix. Set up dimensions. */