a44421a79fb36cc2036fe116b97ea3bc9590cd0c braney Fri Dec 2 09:34:39 2011 -0800 removed rcsid (#295) diff --git src/lib/pslGenoShow.c src/lib/pslGenoShow.c index b987855..08dd8ea 100644 --- src/lib/pslGenoShow.c +++ src/lib/pslGenoShow.c @@ -1,30 +1,29 @@ /* Show aligned exons between a pre-located gene (a stamper gene) in the genome *and its homologues (stamp elements) in the genome. *The aligned exon sequences are shown in blue as regular blat alignment. * The unaligned exon sequence are shown in red. Intron sequences are shown in black. * It is modified from pslShow.c */ #include "common.h" #include "dnaseq.h" #include "htmshell.h" #include "psl.h" #include "cda.h" #include "seqOut.h" -static char const rcsid[] = "$Id: pslGenoShow.c,v 1.8 2009/08/05 20:33:20 galt Exp $"; static void pslShowAlignmentStranded2(struct psl *psl, boolean isProt, char *qName, bioSeq *qSeq, int qStart, int qEnd, char *tName, bioSeq *tSeq, int tStart, int tEnd, int exnStarts[], int exnEnds[], int exnCnt, FILE *f) /* Show stamper gene and stamp elements alignment using genomic sequence. * The aligned exons' sequence of stamper gene are shown in colors as usual, but the * the unaligned exon's sequence of stamper gene are shown in red color. */ { boolean tIsRc = (psl->strand[1] == '-'); boolean qIsRc = (psl->strand[0] == '-'); int mulFactor = (isProt ? 3 : 1); DNA *dna = NULL; /* Mixed case version of genomic DNA. */ int qSize = qSeq->size; char *qLetters = cloneString(qSeq->dna);