a44421a79fb36cc2036fe116b97ea3bc9590cd0c braney Fri Dec 2 09:34:39 2011 -0800 removed rcsid (#295) diff --git src/utils/scaffoldFaToAgp/scaffoldFaToAgp.c src/utils/scaffoldFaToAgp/scaffoldFaToAgp.c index c47325b..efeb3f1 100644 --- src/utils/scaffoldFaToAgp/scaffoldFaToAgp.c +++ src/utils/scaffoldFaToAgp/scaffoldFaToAgp.c @@ -5,31 +5,30 @@ * The AGP file contains scaffolds and inter-scaffold gaps. * This file is used to generate the assembly ("gold") track. * The "gap" file contains gaps within scaffolds as well * as inter-scaffold gaps. This file is used to generate the "gap" track. * It is formatted similarly to an AGP, but only contains gap entries. * The lift file is associated with the AGP file. It is used to * lift scaffold coordinates to chromosome coordinates. */ #include "common.h" #include "fa.h" #include "options.h" #include "../../hg/inc/agpFrag.h" #include "../../hg/inc/agpGap.h" -static char const rcsid[] = "$Id: scaffoldFaToAgp.c,v 1.8 2007/03/26 17:07:55 hiram Exp $"; #define SCAFFOLD_GAP_TYPE "contig" #define FRAGMENT_GAP_TYPE "frag" /* within scaffolds (bridged) */ #define CHROM_NAME "chrUn" int minGapSize = 5; int scaffoldGapSize = 1000; void usage() /* Print usage instructions and exit. */ { errAbort("scaffoldFaToAgp - generate an AGP file, gap file, and lift file from a scaffold FA file.\n" "usage:\n" " scaffoldFaToAgp source.fa\n" "options:\n"