a44421a79fb36cc2036fe116b97ea3bc9590cd0c braney Fri Dec 2 09:34:39 2011 -0800 removed rcsid (#295) diff --git src/hg/hgChroms/hgChroms.c src/hg/hgChroms/hgChroms.c index 49dc2a5..dcf2e43 100644 --- src/hg/hgChroms/hgChroms.c +++ src/hg/hgChroms/hgChroms.c @@ -1,76 +1,75 @@ /* hgChroms - print chromosomes for a genome. */ #include "common.h" #include "hdb.h" #include "options.h" -static char const rcsid[] = "$Id: hgChroms.c,v 1.4 2008/09/03 19:18:48 markd Exp $"; void usage() /* Explain usage and exit. */ { errAbort( "hgChroms - print chromosomes for a genome.\n" "\n" "usage:\n" " hgChroms [options] db\n" "\n" "Options:\n" " -noRandom - omit random and Un chromsomes\n" " -noHap - omit _hap0 chromsomes\n" " -noPrefix - omit \"chr\" prefix\n" ); } /* command line */ static struct optionSpec optionSpec[] = { {"noRandom", OPTION_BOOLEAN}, {"noHap", OPTION_BOOLEAN}, {"noPrefix", OPTION_BOOLEAN}, {NULL, 0} }; boolean noRandom; boolean noHap; boolean noPrefix; bool inclChrom(struct slName *chrom) /* check if a chromosome should be included */ { return !((noRandom && (endsWith(chrom->name, "_random") || startsWith("chrUn", chrom->name))) || (noHap && stringIn( "_hap", chrom->name))); } void hgChroms(char *db) /* hgChroms - print chromosomes for a genome. */ { struct slName *chrom, *chroms = hAllChromNames(db); for (chrom = chroms; chrom != NULL; chrom = chrom->next) { if (inclChrom(chrom)) { if (noPrefix && startsWith("chr", chrom->name)) { printf("%s\n", chrom->name + strlen("chr")); } else { printf("%s\n", chrom->name); } } } } int main(int argc, char *argv[]) /* Process command line. */ { optionInit(&argc, argv, optionSpec); if (argc != 2) usage(); noRandom = optionExists("noRandom"); noHap = optionExists("noHap"); noPrefix = optionExists("noPrefix"); hgChroms(argv[1]); return 0; }