a44421a79fb36cc2036fe116b97ea3bc9590cd0c braney Fri Dec 2 09:34:39 2011 -0800 removed rcsid (#295) diff --git src/hg/lib/bactigPos.c src/hg/lib/bactigPos.c index 31d1475..8b3f969 100644 --- src/hg/lib/bactigPos.c +++ src/hg/lib/bactigPos.c @@ -1,131 +1,130 @@ /* bactigPos.c was originally generated by the autoSql program, which also * generated bactigPos.h and bactigPos.sql. This module links the database and * the RAM representation of objects. */ #include "common.h" #include "linefile.h" #include "dystring.h" #include "jksql.h" #include "bactigPos.h" -static char const rcsid[] = "$Id: bactigPos.c,v 1.3 2005/04/11 08:13:43 markd Exp $"; void bactigPosStaticLoad(char **row, struct bactigPos *ret) /* Load a row from bactigPos table into ret. The contents of ret will * be replaced at the next call to this function. */ { ret->chrom = row[0]; ret->chromStart = sqlUnsigned(row[1]); ret->chromEnd = sqlUnsigned(row[2]); ret->name = row[3]; ret->startContig = row[4]; ret->endContig = row[5]; } struct bactigPos *bactigPosLoad(char **row) /* Load a bactigPos from row fetched with select * from bactigPos * from database. Dispose of this with bactigPosFree(). */ { struct bactigPos *ret; AllocVar(ret); ret->chrom = cloneString(row[0]); ret->chromStart = sqlUnsigned(row[1]); ret->chromEnd = sqlUnsigned(row[2]); ret->name = cloneString(row[3]); ret->startContig = cloneString(row[4]); ret->endContig = cloneString(row[5]); return ret; } struct bactigPos *bactigPosLoadAll(char *fileName) /* Load all bactigPos from a tab-separated file. * Dispose of this with bactigPosFreeList(). */ { struct bactigPos *list = NULL, *el; struct lineFile *lf = lineFileOpen(fileName, TRUE); char *row[6]; while (lineFileRow(lf, row)) { el = bactigPosLoad(row); slAddHead(&list, el); } lineFileClose(&lf); slReverse(&list); return list; } struct bactigPos *bactigPosCommaIn(char **pS, struct bactigPos *ret) /* Create a bactigPos out of a comma separated string. * This will fill in ret if non-null, otherwise will * return a new bactigPos */ { char *s = *pS; if (ret == NULL) AllocVar(ret); ret->chrom = sqlStringComma(&s); ret->chromStart = sqlUnsignedComma(&s); ret->chromEnd = sqlUnsignedComma(&s); ret->name = sqlStringComma(&s); ret->startContig = sqlStringComma(&s); ret->endContig = sqlStringComma(&s); *pS = s; return ret; } void bactigPosFree(struct bactigPos **pEl) /* Free a single dynamically allocated bactigPos such as created * with bactigPosLoad(). */ { struct bactigPos *el; if ((el = *pEl) == NULL) return; freeMem(el->chrom); freeMem(el->name); freeMem(el->startContig); freeMem(el->endContig); freez(pEl); } void bactigPosFreeList(struct bactigPos **pList) /* Free a list of dynamically allocated bactigPos's */ { struct bactigPos *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; bactigPosFree(&el); } *pList = NULL; } void bactigPosOutput(struct bactigPos *el, FILE *f, char sep, char lastSep) /* Print out bactigPos. Separate fields with sep. Follow last field with lastSep. */ { if (sep == ',') fputc('"',f); fprintf(f, "%s", el->chrom); if (sep == ',') fputc('"',f); fputc(sep,f); fprintf(f, "%u", el->chromStart); fputc(sep,f); fprintf(f, "%u", el->chromEnd); fputc(sep,f); if (sep == ',') fputc('"',f); fprintf(f, "%s", el->name); if (sep == ',') fputc('"',f); fputc(sep,f); if (sep == ',') fputc('"',f); fprintf(f, "%s", el->startContig); if (sep == ',') fputc('"',f); fputc(sep,f); if (sep == ',') fputc('"',f); fprintf(f, "%s", el->endContig); if (sep == ',') fputc('"',f); fputc(lastSep,f); } /* -------------------------------- End autoSql Generated Code -------------------------------- */