a44421a79fb36cc2036fe116b97ea3bc9590cd0c
braney
  Fri Dec 2 09:34:39 2011 -0800
removed rcsid (#295)
diff --git src/hg/lib/chr18deletions.c src/hg/lib/chr18deletions.c
index 188f7e5..df2ecf7 100644
--- src/hg/lib/chr18deletions.c
+++ src/hg/lib/chr18deletions.c
@@ -1,233 +1,232 @@
 /* chr18deletions.c was originally generated by the autoSql program, which also 
  * generated chr18deletions.h and chr18deletions.sql.  This module links the database and
  * the RAM representation of objects. */
 
 #include "common.h"
 #include "linefile.h"
 #include "dystring.h"
 #include "jksql.h"
 #include "chr18deletions.h"
 
-static char const rcsid[] = "$Id: chr18deletions.c,v 1.3 2005/04/13 06:25:51 markd Exp $";
 
 struct chr18deletions *chr18deletionsLoad(char **row)
 /* Load a chr18deletions from row fetched with select * from chr18deletions
  * from database.  Dispose of this with chr18deletionsFree(). */
 {
 struct chr18deletions *ret;
 int sizeOne;
 
 AllocVar(ret);
 ret->ssCount = sqlUnsigned(row[6]);
 ret->seCount = sqlUnsigned(row[8]);
 ret->lsCount = sqlUnsigned(row[10]);
 ret->leCount = sqlUnsigned(row[12]);
 ret->chrom = cloneString(row[0]);
 ret->chromStart = sqlSigned(row[1]);
 ret->chromEnd = sqlUnsigned(row[2]);
 ret->name = cloneString(row[3]);
 ret->score = sqlUnsigned(row[4]);
 strcpy(ret->strand, row[5]);
 sqlUnsignedDynamicArray(row[7], &ret->smallStarts, &sizeOne);
 assert(sizeOne == ret->ssCount);
 sqlUnsignedDynamicArray(row[9], &ret->smallEnds, &sizeOne);
 assert(sizeOne == ret->seCount);
 sqlUnsignedDynamicArray(row[11], &ret->largeStarts, &sizeOne);
 assert(sizeOne == ret->lsCount);
 sqlUnsignedDynamicArray(row[13], &ret->largeEnds, &sizeOne);
 assert(sizeOne == ret->leCount);
 return ret;
 }
 
 struct chr18deletions *chr18deletionsLoadAll(char *fileName) 
 /* Load all chr18deletions from a tab-separated file.
  * Dispose of this with chr18deletionsFreeList(). */
 {
 struct chr18deletions *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[14];
 
 while (lineFileRow(lf, row))
     {
     el = chr18deletionsLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct chr18deletions *chr18deletionsLoadWhere(struct sqlConnection *conn, char *table, char *where)
 /* Load all chr18deletions from table that satisfy where clause. The
  * where clause may be NULL in which case whole table is loaded
  * Dispose of this with chr18deletionsFreeList(). */
 {
 struct chr18deletions *list = NULL, *el;
 struct dyString *query = dyStringNew(256);
 struct sqlResult *sr;
 char **row;
 
 dyStringPrintf(query, "select * from %s", table);
 if (where != NULL)
     dyStringPrintf(query, " where %s", where);
 sr = sqlGetResult(conn, query->string);
 while ((row = sqlNextRow(sr)) != NULL)
     {
     el = chr18deletionsLoad(row);
     slAddHead(&list, el);
     }
 slReverse(&list);
 sqlFreeResult(&sr);
 dyStringFree(&query);
 return list;
 }
 
 struct chr18deletions *chr18deletionsCommaIn(char **pS, struct chr18deletions *ret)
 /* Create a chr18deletions out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new chr18deletions */
 {
 char *s = *pS;
 int i;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->chrom = sqlStringComma(&s);
 ret->chromStart = sqlSignedComma(&s);
 ret->chromEnd = sqlUnsignedComma(&s);
 ret->name = sqlStringComma(&s);
 ret->score = sqlUnsignedComma(&s);
 sqlFixedStringComma(&s, ret->strand, sizeof(ret->strand));
 ret->ssCount = sqlUnsignedComma(&s);
 s = sqlEatChar(s, '{');
 AllocArray(ret->smallStarts, ret->ssCount);
 for (i=0; i<ret->ssCount; ++i)
     {
     ret->smallStarts[i] = sqlUnsignedComma(&s);
     }
 s = sqlEatChar(s, '}');
 s = sqlEatChar(s, ',');
 ret->seCount = sqlUnsignedComma(&s);
 s = sqlEatChar(s, '{');
 AllocArray(ret->smallEnds, ret->seCount);
 for (i=0; i<ret->seCount; ++i)
     {
     ret->smallEnds[i] = sqlUnsignedComma(&s);
     }
 s = sqlEatChar(s, '}');
 s = sqlEatChar(s, ',');
 ret->lsCount = sqlUnsignedComma(&s);
 s = sqlEatChar(s, '{');
 AllocArray(ret->largeStarts, ret->lsCount);
 for (i=0; i<ret->lsCount; ++i)
     {
     ret->largeStarts[i] = sqlUnsignedComma(&s);
     }
 s = sqlEatChar(s, '}');
 s = sqlEatChar(s, ',');
 ret->leCount = sqlUnsignedComma(&s);
 s = sqlEatChar(s, '{');
 AllocArray(ret->largeEnds, ret->leCount);
 for (i=0; i<ret->leCount; ++i)
     {
     ret->largeEnds[i] = sqlUnsignedComma(&s);
     }
 s = sqlEatChar(s, '}');
 s = sqlEatChar(s, ',');
 *pS = s;
 return ret;
 }
 
 void chr18deletionsFree(struct chr18deletions **pEl)
 /* Free a single dynamically allocated chr18deletions such as created
  * with chr18deletionsLoad(). */
 {
 struct chr18deletions *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->chrom);
 freeMem(el->name);
 freeMem(el->smallStarts);
 freeMem(el->smallEnds);
 freeMem(el->largeStarts);
 freeMem(el->largeEnds);
 freez(pEl);
 }
 
 void chr18deletionsFreeList(struct chr18deletions **pList)
 /* Free a list of dynamically allocated chr18deletions's */
 {
 struct chr18deletions *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     chr18deletionsFree(&el);
     }
 *pList = NULL;
 }
 
 void chr18deletionsOutput(struct chr18deletions *el, FILE *f, char sep, char lastSep) 
 /* Print out chr18deletions.  Separate fields with sep. Follow last field with lastSep. */
 {
 int i;
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->chrom);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%d", el->chromStart);
 fputc(sep,f);
 fprintf(f, "%u", el->chromEnd);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->name);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->score);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->strand);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->ssCount);
 fputc(sep,f);
 if (sep == ',') fputc('{',f);
 for (i=0; i<el->ssCount; ++i)
     {
     fprintf(f, "%u", el->smallStarts[i]);
     fputc(',', f);
     }
 if (sep == ',') fputc('}',f);
 fputc(sep,f);
 fprintf(f, "%u", el->seCount);
 fputc(sep,f);
 if (sep == ',') fputc('{',f);
 for (i=0; i<el->seCount; ++i)
     {
     fprintf(f, "%u", el->smallEnds[i]);
     fputc(',', f);
     }
 if (sep == ',') fputc('}',f);
 fputc(sep,f);
 fprintf(f, "%u", el->lsCount);
 fputc(sep,f);
 if (sep == ',') fputc('{',f);
 for (i=0; i<el->lsCount; ++i)
     {
     fprintf(f, "%u", el->largeStarts[i]);
     fputc(',', f);
     }
 if (sep == ',') fputc('}',f);
 fputc(sep,f);
 fprintf(f, "%u", el->leCount);
 fputc(sep,f);
 if (sep == ',') fputc('{',f);
 for (i=0; i<el->leCount; ++i)
     {
     fprintf(f, "%u", el->largeEnds[i]);
     fputc(',', f);
     }
 if (sep == ',') fputc('}',f);
 fputc(lastSep,f);
 }