a44421a79fb36cc2036fe116b97ea3bc9590cd0c
braney
  Fri Dec 2 09:34:39 2011 -0800
removed rcsid (#295)
diff --git src/hg/lib/dgv.c src/hg/lib/dgv.c
index e1ad113..107a3a2 100644
--- src/hg/lib/dgv.c
+++ src/hg/lib/dgv.c
@@ -1,206 +1,205 @@
 /* dgv.c was originally generated by the autoSql program, which also 
  * generated dgv.h and dgv.sql.  This module links the database and
  * the RAM representation of objects. */
 
 #include "common.h"
 #include "linefile.h"
 #include "dystring.h"
 #include "jksql.h"
 #include "dgv.h"
 
-static char const rcsid[] = "$Id: dgv.c,v 1.1 2008/05/09 20:41:18 angie Exp $";
 
 void dgvStaticLoad(char **row, struct dgv *ret)
 /* Load a row from dgv table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 {
 
 ret->chrom = row[0];
 ret->chromStart = sqlUnsigned(row[1]);
 ret->chromEnd = sqlUnsigned(row[2]);
 ret->name = row[3];
 ret->score = sqlUnsigned(row[4]);
 safecpy(ret->strand, sizeof(ret->strand), row[5]);
 ret->thickStart = sqlUnsigned(row[6]);
 ret->thickEnd = sqlUnsigned(row[7]);
 ret->itemRgb = sqlUnsigned(row[8]);
 ret->landmark = row[9];
 ret->varType = row[10];
 ret->reference = row[11];
 ret->pubMedId = sqlUnsigned(row[12]);
 ret->method = row[13];
 ret->sample = row[14];
 }
 
 struct dgv *dgvLoad(char **row)
 /* Load a dgv from row fetched with select * from dgv
  * from database.  Dispose of this with dgvFree(). */
 {
 struct dgv *ret;
 
 AllocVar(ret);
 ret->chrom = cloneString(row[0]);
 ret->chromStart = sqlUnsigned(row[1]);
 ret->chromEnd = sqlUnsigned(row[2]);
 ret->name = cloneString(row[3]);
 ret->score = sqlUnsigned(row[4]);
 safecpy(ret->strand, sizeof(ret->strand), row[5]);
 ret->thickStart = sqlUnsigned(row[6]);
 ret->thickEnd = sqlUnsigned(row[7]);
 ret->itemRgb = sqlUnsigned(row[8]);
 ret->landmark = cloneString(row[9]);
 ret->varType = cloneString(row[10]);
 ret->reference = cloneString(row[11]);
 ret->pubMedId = sqlUnsigned(row[12]);
 ret->method = cloneString(row[13]);
 ret->sample = cloneString(row[14]);
 return ret;
 }
 
 struct dgv *dgvLoadAll(char *fileName) 
 /* Load all dgv from a whitespace-separated file.
  * Dispose of this with dgvFreeList(). */
 {
 struct dgv *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[15];
 
 while (lineFileRow(lf, row))
     {
     el = dgvLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct dgv *dgvLoadAllByChar(char *fileName, char chopper) 
 /* Load all dgv from a chopper separated file.
  * Dispose of this with dgvFreeList(). */
 {
 struct dgv *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[15];
 
 while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
     {
     el = dgvLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct dgv *dgvCommaIn(char **pS, struct dgv *ret)
 /* Create a dgv out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new dgv */
 {
 char *s = *pS;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->chrom = sqlStringComma(&s);
 ret->chromStart = sqlUnsignedComma(&s);
 ret->chromEnd = sqlUnsignedComma(&s);
 ret->name = sqlStringComma(&s);
 ret->score = sqlUnsignedComma(&s);
 sqlFixedStringComma(&s, ret->strand, sizeof(ret->strand));
 ret->thickStart = sqlUnsignedComma(&s);
 ret->thickEnd = sqlUnsignedComma(&s);
 ret->itemRgb = sqlUnsignedComma(&s);
 ret->landmark = sqlStringComma(&s);
 ret->varType = sqlStringComma(&s);
 ret->reference = sqlStringComma(&s);
 ret->pubMedId = sqlUnsignedComma(&s);
 ret->method = sqlStringComma(&s);
 ret->sample = sqlStringComma(&s);
 *pS = s;
 return ret;
 }
 
 void dgvFree(struct dgv **pEl)
 /* Free a single dynamically allocated dgv such as created
  * with dgvLoad(). */
 {
 struct dgv *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->chrom);
 freeMem(el->name);
 freeMem(el->landmark);
 freeMem(el->varType);
 freeMem(el->reference);
 freeMem(el->method);
 freeMem(el->sample);
 freez(pEl);
 }
 
 void dgvFreeList(struct dgv **pList)
 /* Free a list of dynamically allocated dgv's */
 {
 struct dgv *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     dgvFree(&el);
     }
 *pList = NULL;
 }
 
 void dgvOutput(struct dgv *el, FILE *f, char sep, char lastSep) 
 /* Print out dgv.  Separate fields with sep. Follow last field with lastSep. */
 {
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->chrom);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->chromStart);
 fputc(sep,f);
 fprintf(f, "%u", el->chromEnd);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->name);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->score);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->strand);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->thickStart);
 fputc(sep,f);
 fprintf(f, "%u", el->thickEnd);
 fputc(sep,f);
 fprintf(f, "%u", el->itemRgb);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->landmark);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->varType);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->reference);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->pubMedId);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->method);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->sample);
 if (sep == ',') fputc('"',f);
 fputc(lastSep,f);
 }
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */