a44421a79fb36cc2036fe116b97ea3bc9590cd0c
braney
  Fri Dec 2 09:34:39 2011 -0800
removed rcsid (#295)
diff --git src/hg/lib/ggDbRep.c src/hg/lib/ggDbRep.c
index f438868..268bb5a 100644
--- src/hg/lib/ggDbRep.c
+++ src/hg/lib/ggDbRep.c
@@ -1,217 +1,216 @@
 /*****************************************************************************
  * Copyright (C) 2000 Jim Kent.  This source code may be freely used         *
  * for personal, academic, and non-profit purposes.  Commercial use          *
  * permitted only by explicit agreement with Jim Kent (jim_kent@pacbell.net) *
  *****************************************************************************/
 /* ggDbRep.c was originally generated by the autoSql program, which also 
  * generated ggDbRep.h and ggDbRep.sql.  This module links the database and the RAM 
  * representation of objects. */
 #include "common.h"
 #include "jksql.h"
 #include "ggDbRep.h"
 
-static char const rcsid[] = "$Id: ggDbRep.c,v 1.3 2003/05/06 07:22:22 kate Exp $";
 
 struct altGraph *altGraphLoad(char **row)
 /* Load a altGraph from row fetched with select * from altGraph
  * from database.  Dispose of this with altGraphFree(). */
 {
 struct altGraph *ret;
 int sizeOne,i;
 char *s;
 
 AllocVar(ret);
 ret->vertexCount = sqlUnsigned(row[6]);
 ret->edgeCount = sqlUnsigned(row[10]);
 ret->mrnaRefCount = sqlSigned(row[13]);
 ret->id = sqlUnsigned(row[0]);
 ret->orientation = sqlSigned(row[1]);
 ret->startBac = sqlUnsigned(row[2]);
 ret->startPos = sqlUnsigned(row[3]);
 ret->endBac = sqlUnsigned(row[4]);
 ret->endPos = sqlUnsigned(row[5]);
 sqlUbyteDynamicArray(row[7], &ret->vTypes, &sizeOne);
 assert(sizeOne == ret->vertexCount);
 sqlUnsignedDynamicArray(row[8], &ret->vBacs, &sizeOne);
 assert(sizeOne == ret->vertexCount);
 sqlUnsignedDynamicArray(row[9], &ret->vPositions, &sizeOne);
 assert(sizeOne == ret->vertexCount);
 sqlUnsignedDynamicArray(row[11], &ret->edgeStarts, &sizeOne);
 assert(sizeOne == ret->edgeCount);
 sqlUnsignedDynamicArray(row[12], &ret->edgeEnds, &sizeOne);
 assert(sizeOne == ret->edgeCount);
 sqlUnsignedDynamicArray(row[14], &ret->mrnaRefs, &sizeOne);
 assert(sizeOne == ret->mrnaRefCount);
 return ret;
 }
 
 struct altGraph *altGraphCommaIn(char **pS)
 /* Create a altGraph out of a comma separated string. */
 {
 struct altGraph *ret;
 char *s = *pS;
 int i;
 
 AllocVar(ret);
 ret->id = sqlUnsignedComma(&s);
 ret->orientation = sqlSignedComma(&s);
 ret->startBac = sqlUnsignedComma(&s);
 ret->startPos = sqlUnsignedComma(&s);
 ret->endBac = sqlUnsignedComma(&s);
 ret->endPos = sqlUnsignedComma(&s);
 ret->vertexCount = sqlUnsignedComma(&s);
 s = sqlEatChar(s, '{');
 AllocArray(ret->vTypes, ret->vertexCount);
 for (i=0; i<ret->vertexCount; ++i)
     {
     ret->vTypes[i] = sqlUnsignedComma(&s);
     }
 s = sqlEatChar(s, '}');
 s = sqlEatChar(s, ',');
 s = sqlEatChar(s, '{');
 AllocArray(ret->vBacs, ret->vertexCount);
 for (i=0; i<ret->vertexCount; ++i)
     {
     ret->vBacs[i] = sqlUnsignedComma(&s);
     }
 s = sqlEatChar(s, '}');
 s = sqlEatChar(s, ',');
 s = sqlEatChar(s, '{');
 AllocArray(ret->vPositions, ret->vertexCount);
 for (i=0; i<ret->vertexCount; ++i)
     {
     ret->vPositions[i] = sqlUnsignedComma(&s);
     }
 s = sqlEatChar(s, '}');
 s = sqlEatChar(s, ',');
 ret->edgeCount = sqlUnsignedComma(&s);
 s = sqlEatChar(s, '{');
 AllocArray(ret->edgeStarts, ret->edgeCount);
 for (i=0; i<ret->edgeCount; ++i)
     {
     ret->edgeStarts[i] = sqlUnsignedComma(&s);
     }
 s = sqlEatChar(s, '}');
 s = sqlEatChar(s, ',');
 s = sqlEatChar(s, '{');
 AllocArray(ret->edgeEnds, ret->edgeCount);
 for (i=0; i<ret->edgeCount; ++i)
     {
     ret->edgeEnds[i] = sqlUnsignedComma(&s);
     }
 s = sqlEatChar(s, '}');
 s = sqlEatChar(s, ',');
 ret->mrnaRefCount = sqlSignedComma(&s);
 s = sqlEatChar(s, '{');
 AllocArray(ret->mrnaRefs, ret->mrnaRefCount);
 for (i=0; i<ret->mrnaRefCount; ++i)
     {
     ret->mrnaRefs[i] = sqlUnsignedComma(&s);
     }
 s = sqlEatChar(s, '}');
 s = sqlEatChar(s, ',');
 *pS = s;
 return ret;
 }
 
 void altGraphFree(struct altGraph **pEl)
 /* Free a single dynamically allocated altGraph such as created
  * with altGraphLoad(). */
 {
 struct altGraph *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->vTypes);
 freeMem(el->vBacs);
 freeMem(el->vPositions);
 freeMem(el->edgeStarts);
 freeMem(el->edgeEnds);
 freeMem(el->mrnaRefs);
 freez(pEl);
 }
 
 void altGraphFreeList(struct altGraph **pList)
 /* Free a list of dynamically allocated altGraph's */
 {
 struct altGraph *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     altGraphFree(&el);
     }
 *pList = NULL;
 }
 
 void altGraphOutput(struct altGraph *el, FILE *f, char sep, char lastSep) 
 /* Print out altGraph.  Separate fields with sep. Follow last field with lastSep. */
 {
 int i;
 fprintf(f, "%u", el->id);
 fputc(sep,f);
 fprintf(f, "%d", el->orientation);
 fputc(sep,f);
 fprintf(f, "%u", el->startBac);
 fputc(sep,f);
 fprintf(f, "%u", el->startPos);
 fputc(sep,f);
 fprintf(f, "%u", el->endBac);
 fputc(sep,f);
 fprintf(f, "%u", el->endPos);
 fputc(sep,f);
 fprintf(f, "%u", el->vertexCount);
 fputc(sep,f);
 if (sep == ',') fputc('{',f);
 for (i=0; i<el->vertexCount; ++i)
     {
     fprintf(f, "%u", el->vTypes[i]);
     fputc(',', f);
     }
 if (sep == ',') fputc('}',f);
 fputc(sep,f);
 if (sep == ',') fputc('{',f);
 for (i=0; i<el->vertexCount; ++i)
     {
     fprintf(f, "%u", el->vBacs[i]);
     fputc(',', f);
     }
 if (sep == ',') fputc('}',f);
 fputc(sep,f);
 if (sep == ',') fputc('{',f);
 for (i=0; i<el->vertexCount; ++i)
     {
     fprintf(f, "%u", el->vPositions[i]);
     fputc(',', f);
     }
 if (sep == ',') fputc('}',f);
 fputc(sep,f);
 fprintf(f, "%u", el->edgeCount);
 fputc(sep,f);
 if (sep == ',') fputc('{',f);
 for (i=0; i<el->edgeCount; ++i)
     {
     fprintf(f, "%u", el->edgeStarts[i]);
     fputc(',', f);
     }
 if (sep == ',') fputc('}',f);
 fputc(sep,f);
 if (sep == ',') fputc('{',f);
 for (i=0; i<el->edgeCount; ++i)
     {
     fprintf(f, "%u", el->edgeEnds[i]);
     fputc(',', f);
     }
 if (sep == ',') fputc('}',f);
 fputc(sep,f);
 fprintf(f, "%d", el->mrnaRefCount);
 fputc(sep,f);
 if (sep == ',') fputc('{',f);
 for (i=0; i<el->mrnaRefCount; ++i)
     {
     fprintf(f, "%u", el->mrnaRefs[i]);
     fputc(',', f);
     }
 if (sep == ',') fputc('}',f);
 fputc(lastSep,f);
 }