a44421a79fb36cc2036fe116b97ea3bc9590cd0c
braney
  Fri Dec 2 09:34:39 2011 -0800
removed rcsid (#295)
diff --git src/hg/lib/mammalPsg.c src/hg/lib/mammalPsg.c
index 71aa163..a1257da 100644
--- src/hg/lib/mammalPsg.c
+++ src/hg/lib/mammalPsg.c
@@ -1,293 +1,292 @@
 /* mammalPsg.c was originally generated by the autoSql program, which also 
  * generated mammalPsg.h and mammalPsg.sql.  This module links the database and
  * the RAM representation of objects. */
 
 #include "common.h"
 #include "linefile.h"
 #include "dystring.h"
 #include "jksql.h"
 #include "mammalPsg.h"
 
-static char const rcsid[] = "$Id: mammalPsg.c,v 1.1 2008/07/03 21:52:09 acs Exp $";
 
 struct mammalPsg *mammalPsgLoad(char **row)
 /* Load a mammalPsg from row fetched with select * from mammalPsg
  * from database.  Dispose of this with mammalPsgFree(). */
 {
 struct mammalPsg *ret;
 
 AllocVar(ret);
 ret->blockCount = sqlSigned(row[9]);
 ret->chrom = cloneString(row[0]);
 ret->chromStart = sqlUnsigned(row[1]);
 ret->chromEnd = sqlUnsigned(row[2]);
 ret->name = cloneString(row[3]);
 ret->score = sqlUnsigned(row[4]);
 safecpy(ret->strand, sizeof(ret->strand), row[5]);
 ret->thickStart = sqlUnsigned(row[6]);
 ret->thickEnd = sqlUnsigned(row[7]);
 ret->reserved = sqlUnsigned(row[8]);
 {
 int sizeOne;
 sqlSignedDynamicArray(row[10], &ret->blockSizes, &sizeOne);
 assert(sizeOne == ret->blockCount);
 }
 {
 int sizeOne;
 sqlSignedDynamicArray(row[11], &ret->chromStarts, &sizeOne);
 assert(sizeOne == ret->blockCount);
 }
 ret->lrtAllPValue = sqlFloat(row[12]);
 ret->lrtAllIsFdr = sqlUnsigned(row[13]);
 ret->lrtPrimateBrPValue = sqlFloat(row[14]);
 ret->lrtPrimateBrIsFdr = sqlUnsigned(row[15]);
 ret->lrtPrimateClPValue = sqlFloat(row[16]);
 ret->lrtPrimateClIsFdr = sqlUnsigned(row[17]);
 ret->lrtRodentBrPValue = sqlFloat(row[18]);
 ret->lrtRodentBrIsFdr = sqlUnsigned(row[19]);
 ret->lrtRodentClPValue = sqlFloat(row[20]);
 ret->lrtRodentClIsFdr = sqlUnsigned(row[21]);
 ret->lrtHumanPValue = sqlFloat(row[22]);
 ret->lrtHumanIsFdr = sqlUnsigned(row[23]);
 ret->lrtChimpPValue = sqlFloat(row[24]);
 ret->lrtChimpIsFdr = sqlUnsigned(row[25]);
 ret->lrtHominidPValue = sqlFloat(row[26]);
 ret->lrtHominidIsFdr = sqlUnsigned(row[27]);
 ret->lrtMacaquePValue = sqlFloat(row[28]);
 ret->lrtMacaqueIsFdr = sqlUnsigned(row[29]);
 ret->bestHist = sqlUnsigned(row[30]);
 ret->bestHistPP = sqlFloat(row[31]);
 ret->nextBestHist = sqlUnsigned(row[32]);
 ret->nextBestHistPP = sqlFloat(row[33]);
 return ret;
 }
 
 struct mammalPsg *mammalPsgLoadAll(char *fileName) 
 /* Load all mammalPsg from a whitespace-separated file.
  * Dispose of this with mammalPsgFreeList(). */
 {
 struct mammalPsg *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[34];
 
 while (lineFileRow(lf, row))
     {
     el = mammalPsgLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct mammalPsg *mammalPsgLoadAllByChar(char *fileName, char chopper) 
 /* Load all mammalPsg from a chopper separated file.
  * Dispose of this with mammalPsgFreeList(). */
 {
 struct mammalPsg *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[34];
 
 while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
     {
     el = mammalPsgLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct mammalPsg *mammalPsgCommaIn(char **pS, struct mammalPsg *ret)
 /* Create a mammalPsg out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new mammalPsg */
 {
 char *s = *pS;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->chrom = sqlStringComma(&s);
 ret->chromStart = sqlUnsignedComma(&s);
 ret->chromEnd = sqlUnsignedComma(&s);
 ret->name = sqlStringComma(&s);
 ret->score = sqlUnsignedComma(&s);
 sqlFixedStringComma(&s, ret->strand, sizeof(ret->strand));
 ret->thickStart = sqlUnsignedComma(&s);
 ret->thickEnd = sqlUnsignedComma(&s);
 ret->reserved = sqlUnsignedComma(&s);
 ret->blockCount = sqlSignedComma(&s);
 {
 int i;
 s = sqlEatChar(s, '{');
 AllocArray(ret->blockSizes, ret->blockCount);
 for (i=0; i<ret->blockCount; ++i)
     {
     ret->blockSizes[i] = sqlSignedComma(&s);
     }
 s = sqlEatChar(s, '}');
 s = sqlEatChar(s, ',');
 }
 {
 int i;
 s = sqlEatChar(s, '{');
 AllocArray(ret->chromStarts, ret->blockCount);
 for (i=0; i<ret->blockCount; ++i)
     {
     ret->chromStarts[i] = sqlSignedComma(&s);
     }
 s = sqlEatChar(s, '}');
 s = sqlEatChar(s, ',');
 }
 ret->lrtAllPValue = sqlFloatComma(&s);
 ret->lrtAllIsFdr = sqlUnsignedComma(&s);
 ret->lrtPrimateBrPValue = sqlFloatComma(&s);
 ret->lrtPrimateBrIsFdr = sqlUnsignedComma(&s);
 ret->lrtPrimateClPValue = sqlFloatComma(&s);
 ret->lrtPrimateClIsFdr = sqlUnsignedComma(&s);
 ret->lrtRodentBrPValue = sqlFloatComma(&s);
 ret->lrtRodentBrIsFdr = sqlUnsignedComma(&s);
 ret->lrtRodentClPValue = sqlFloatComma(&s);
 ret->lrtRodentClIsFdr = sqlUnsignedComma(&s);
 ret->lrtHumanPValue = sqlFloatComma(&s);
 ret->lrtHumanIsFdr = sqlUnsignedComma(&s);
 ret->lrtChimpPValue = sqlFloatComma(&s);
 ret->lrtChimpIsFdr = sqlUnsignedComma(&s);
 ret->lrtHominidPValue = sqlFloatComma(&s);
 ret->lrtHominidIsFdr = sqlUnsignedComma(&s);
 ret->lrtMacaquePValue = sqlFloatComma(&s);
 ret->lrtMacaqueIsFdr = sqlUnsignedComma(&s);
 ret->bestHist = sqlUnsignedComma(&s);
 ret->bestHistPP = sqlFloatComma(&s);
 ret->nextBestHist = sqlUnsignedComma(&s);
 ret->nextBestHistPP = sqlFloatComma(&s);
 *pS = s;
 return ret;
 }
 
 void mammalPsgFree(struct mammalPsg **pEl)
 /* Free a single dynamically allocated mammalPsg such as created
  * with mammalPsgLoad(). */
 {
 struct mammalPsg *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->chrom);
 freeMem(el->name);
 freeMem(el->blockSizes);
 freeMem(el->chromStarts);
 freez(pEl);
 }
 
 void mammalPsgFreeList(struct mammalPsg **pList)
 /* Free a list of dynamically allocated mammalPsg's */
 {
 struct mammalPsg *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     mammalPsgFree(&el);
     }
 *pList = NULL;
 }
 
 void mammalPsgOutput(struct mammalPsg *el, FILE *f, char sep, char lastSep) 
 /* Print out mammalPsg.  Separate fields with sep. Follow last field with lastSep. */
 {
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->chrom);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->chromStart);
 fputc(sep,f);
 fprintf(f, "%u", el->chromEnd);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->name);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->score);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->strand);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->thickStart);
 fputc(sep,f);
 fprintf(f, "%u", el->thickEnd);
 fputc(sep,f);
 fprintf(f, "%u", el->reserved);
 fputc(sep,f);
 fprintf(f, "%d", el->blockCount);
 fputc(sep,f);
 {
 int i;
 if (sep == ',') fputc('{',f);
 for (i=0; i<el->blockCount; ++i)
     {
     fprintf(f, "%d", el->blockSizes[i]);
     fputc(',', f);
     }
 if (sep == ',') fputc('}',f);
 }
 fputc(sep,f);
 {
 int i;
 if (sep == ',') fputc('{',f);
 for (i=0; i<el->blockCount; ++i)
     {
     fprintf(f, "%d", el->chromStarts[i]);
     fputc(',', f);
     }
 if (sep == ',') fputc('}',f);
 }
 fputc(sep,f);
 fprintf(f, "%g", el->lrtAllPValue);
 fputc(sep,f);
 fprintf(f, "%u", el->lrtAllIsFdr);
 fputc(sep,f);
 fprintf(f, "%g", el->lrtPrimateBrPValue);
 fputc(sep,f);
 fprintf(f, "%u", el->lrtPrimateBrIsFdr);
 fputc(sep,f);
 fprintf(f, "%g", el->lrtPrimateClPValue);
 fputc(sep,f);
 fprintf(f, "%u", el->lrtPrimateClIsFdr);
 fputc(sep,f);
 fprintf(f, "%g", el->lrtRodentBrPValue);
 fputc(sep,f);
 fprintf(f, "%u", el->lrtRodentBrIsFdr);
 fputc(sep,f);
 fprintf(f, "%g", el->lrtRodentClPValue);
 fputc(sep,f);
 fprintf(f, "%u", el->lrtRodentClIsFdr);
 fputc(sep,f);
 fprintf(f, "%g", el->lrtHumanPValue);
 fputc(sep,f);
 fprintf(f, "%u", el->lrtHumanIsFdr);
 fputc(sep,f);
 fprintf(f, "%g", el->lrtChimpPValue);
 fputc(sep,f);
 fprintf(f, "%u", el->lrtChimpIsFdr);
 fputc(sep,f);
 fprintf(f, "%g", el->lrtHominidPValue);
 fputc(sep,f);
 fprintf(f, "%u", el->lrtHominidIsFdr);
 fputc(sep,f);
 fprintf(f, "%g", el->lrtMacaquePValue);
 fputc(sep,f);
 fprintf(f, "%u", el->lrtMacaqueIsFdr);
 fputc(sep,f);
 fprintf(f, "%u", el->bestHist);
 fputc(sep,f);
 fprintf(f, "%g", el->bestHistPP);
 fputc(sep,f);
 fprintf(f, "%u", el->nextBestHist);
 fputc(sep,f);
 fprintf(f, "%g", el->nextBestHistPP);
 fputc(lastSep,f);
 }
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */