a44421a79fb36cc2036fe116b97ea3bc9590cd0c
braney
  Fri Dec 2 09:34:39 2011 -0800
removed rcsid (#295)
diff --git src/hg/lib/ncRna.c src/hg/lib/ncRna.c
index bee9838..071bb1d 100644
--- src/hg/lib/ncRna.c
+++ src/hg/lib/ncRna.c
@@ -1,177 +1,176 @@
 /* ncRna.c was originally generated by the autoSql program, which also 
  * generated ncRna.h and ncRna.sql.  This module links the database and
  * the RAM representation of objects. */
 
 #include "common.h"
 #include "linefile.h"
 #include "dystring.h"
 #include "jksql.h"
 #include "ncRna.h"
 
-static char const rcsid[] = "$Id: ncRna.c,v 1.1 2007/01/12 22:10:31 fanhsu Exp $";
 
 void ncRnaStaticLoad(char **row, struct ncRna *ret)
 /* Load a row from ncRna table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 {
 
 ret->bin = sqlSigned(row[0]);
 ret->chrom = row[1];
 ret->chromStart = sqlUnsigned(row[2]);
 ret->chromEnd = sqlUnsigned(row[3]);
 ret->name = row[4];
 ret->score = sqlSigned(row[5]);
 strcpy(ret->strand, row[6]);
 ret->thickStart = sqlUnsigned(row[7]);
 ret->thickEnd = sqlUnsigned(row[8]);
 ret->type = row[9];
 ret->extGeneId = row[10];
 }
 
 struct ncRna *ncRnaLoad(char **row)
 /* Load a ncRna from row fetched with select * from ncRna
  * from database.  Dispose of this with ncRnaFree(). */
 {
 struct ncRna *ret;
 
 AllocVar(ret);
 ret->bin = sqlSigned(row[0]);
 ret->chrom = cloneString(row[1]);
 ret->chromStart = sqlUnsigned(row[2]);
 ret->chromEnd = sqlUnsigned(row[3]);
 ret->name = cloneString(row[4]);
 ret->score = sqlSigned(row[5]);
 strcpy(ret->strand, row[6]);
 ret->thickStart = sqlUnsigned(row[7]);
 ret->thickEnd = sqlUnsigned(row[8]);
 ret->type = cloneString(row[9]);
 ret->extGeneId = cloneString(row[10]);
 return ret;
 }
 
 struct ncRna *ncRnaLoadAll(char *fileName) 
 /* Load all ncRna from a whitespace-separated file.
  * Dispose of this with ncRnaFreeList(). */
 {
 struct ncRna *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[11];
 
 while (lineFileRow(lf, row))
     {
     el = ncRnaLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct ncRna *ncRnaLoadAllByChar(char *fileName, char chopper) 
 /* Load all ncRna from a chopper separated file.
  * Dispose of this with ncRnaFreeList(). */
 {
 struct ncRna *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[11];
 
 while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
     {
     el = ncRnaLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct ncRna *ncRnaCommaIn(char **pS, struct ncRna *ret)
 /* Create a ncRna out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new ncRna */
 {
 char *s = *pS;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->bin = sqlSignedComma(&s);
 ret->chrom = sqlStringComma(&s);
 ret->chromStart = sqlUnsignedComma(&s);
 ret->chromEnd = sqlUnsignedComma(&s);
 ret->name = sqlStringComma(&s);
 ret->score = sqlSignedComma(&s);
 sqlFixedStringComma(&s, ret->strand, sizeof(ret->strand));
 ret->thickStart = sqlUnsignedComma(&s);
 ret->thickEnd = sqlUnsignedComma(&s);
 ret->type = sqlStringComma(&s);
 ret->extGeneId = sqlStringComma(&s);
 *pS = s;
 return ret;
 }
 
 void ncRnaFree(struct ncRna **pEl)
 /* Free a single dynamically allocated ncRna such as created
  * with ncRnaLoad(). */
 {
 struct ncRna *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->chrom);
 freeMem(el->name);
 freeMem(el->type);
 freeMem(el->extGeneId);
 freez(pEl);
 }
 
 void ncRnaFreeList(struct ncRna **pList)
 /* Free a list of dynamically allocated ncRna's */
 {
 struct ncRna *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     ncRnaFree(&el);
     }
 *pList = NULL;
 }
 
 void ncRnaOutput(struct ncRna *el, FILE *f, char sep, char lastSep) 
 /* Print out ncRna.  Separate fields with sep. Follow last field with lastSep. */
 {
 fprintf(f, "%d", el->bin);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->chrom);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->chromStart);
 fputc(sep,f);
 fprintf(f, "%u", el->chromEnd);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->name);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%d", el->score);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->strand);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->thickStart);
 fputc(sep,f);
 fprintf(f, "%u", el->thickEnd);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->type);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->extGeneId);
 if (sep == ',') fputc('"',f);
 fputc(lastSep,f);
 }
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */