a44421a79fb36cc2036fe116b97ea3bc9590cd0c
braney
  Fri Dec 2 09:34:39 2011 -0800
removed rcsid (#295)
diff --git src/hg/lib/snpFasta.c src/hg/lib/snpFasta.c
index 773644e..9ea6526 100644
--- src/hg/lib/snpFasta.c
+++ src/hg/lib/snpFasta.c
@@ -1,182 +1,181 @@
 /* snpFasta.c was originally generated by the autoSql program, which also 
  * generated snpFasta.h and snpFasta.sql.  This module links the database and
  * the RAM representation of objects. */
 
 #include "common.h"
 #include "linefile.h"
 #include "dystring.h"
 #include "jksql.h"
 #include "snpFasta.h"
 
-static char const rcsid[] = "$Id: snpFasta.c,v 1.4 2006/01/27 20:27:00 heather Exp $";
 
 void snpFastaStaticLoad(char **row, struct snpFasta *ret)
 /* Load a row from snpFasta table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 {
 
 ret->rsId = row[0];
 ret->chrom = row[1];
 ret->molType = row[2];
 ret->class = row[3];
 ret->observed = row[4];
 ret->leftFlank = row[5];
 ret->rightFlank = row[6];
 }
 
 struct snpFasta *snpFastaLoad(char **row)
 /* Load a snpFasta from row fetched with select * from snpFasta
  * from database.  Dispose of this with snpFastaFree(). */
 {
 struct snpFasta *ret;
 
 AllocVar(ret);
 ret->rsId = cloneString(row[0]);
 ret->chrom = cloneString(row[1]);
 ret->molType = cloneString(row[2]);
 ret->class = cloneString(row[3]);
 ret->observed = cloneString(row[4]);
 ret->leftFlank = cloneString(row[5]);
 ret->rightFlank = cloneString(row[6]);
 return ret;
 }
 
 struct snpFasta *snpFastaLoadAll(char *fileName) 
 /* Load all snpFasta from a whitespace-separated file.
  * Dispose of this with snpFastaFreeList(). */
 {
 struct snpFasta *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[7];
 
 while (lineFileRow(lf, row))
     {
     el = snpFastaLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct snpFasta *snpFastaLoadAllByChar(char *fileName, char chopper) 
 /* Load all snpFasta from a chopper separated file.
  * Dispose of this with snpFastaFreeList(). */
 {
 struct snpFasta *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[7];
 
 while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
     {
     el = snpFastaLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct snpFasta *snpFastaCommaIn(char **pS, struct snpFasta *ret)
 /* Create a snpFasta out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new snpFasta */
 {
 char *s = *pS;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->rsId = sqlStringComma(&s);
 ret->chrom = sqlStringComma(&s);
 ret->molType = sqlStringComma(&s);
 ret->class = sqlStringComma(&s);
 ret->observed = sqlStringComma(&s);
 ret->leftFlank = sqlStringComma(&s);
 ret->rightFlank = sqlStringComma(&s);
 *pS = s;
 return ret;
 }
 
 void snpFastaFree(struct snpFasta **pEl)
 /* Free a single dynamically allocated snpFasta such as created
  * with snpFastaLoad(). */
 {
 struct snpFasta *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->rsId);
 freeMem(el->chrom);
 freeMem(el->molType);
 freeMem(el->class);
 freeMem(el->observed);
 freeMem(el->leftFlank);
 freeMem(el->rightFlank);
 freez(pEl);
 }
 
 void snpFastaFreeList(struct snpFasta **pList)
 /* Free a list of dynamically allocated snpFasta's */
 {
 struct snpFasta *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     snpFastaFree(&el);
     }
 *pList = NULL;
 }
 
 void snpFastaOutput(struct snpFasta *el, FILE *f, char sep, char lastSep) 
 /* Print out snpFasta.  Separate fields with sep. Follow last field with lastSep. */
 {
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->rsId);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->chrom);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->molType);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->class);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->observed);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->leftFlank);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->rightFlank);
 if (sep == ',') fputc('"',f);
 fputc(lastSep,f);
 }
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */
 
 void snpFastaTableCreate(struct sqlConnection *conn)
 /* create a snpFasta table */
 {
 char *createString =
 "CREATE TABLE snpFasta (\n"
 "    rsId varchar(255) not null,       \n"
 "    chrom varchar(255) not null,       \n"
 "    molType varchar(255) not null, \n"
 "    class varchar(255) not null, \n"
 "    observed longblob not null, \n"
 "    leftFlank longblob not null, \n"
 "    rightFlank longblob not null, \n"
 "    INDEX rsId(rsId(12))\n"
 ");\n";
 
 sqlRemakeTable(conn, "snpFasta", createString);
 }