a44421a79fb36cc2036fe116b97ea3bc9590cd0c
braney
  Fri Dec 2 09:34:39 2011 -0800
removed rcsid (#295)
diff --git src/hg/lib/softPromoter.c src/hg/lib/softPromoter.c
index 4ffca84..b52c719 100644
--- src/hg/lib/softPromoter.c
+++ src/hg/lib/softPromoter.c
@@ -1,147 +1,146 @@
 /* softPromoter.c was originally generated by the autoSql program, which also 
  * generated softPromoter.h and softPromoter.sql.  This module links the database and
  * the RAM representation of objects. */
 
 #include "common.h"
 #include "linefile.h"
 #include "jksql.h"
 #include "softPromoter.h"
 
-static char const rcsid[] = "$Id: softPromoter.c,v 1.3 2005/04/13 06:25:57 markd Exp $";
 
 void softPromoterStaticLoad(char **row, struct softPromoter *ret)
 /* Load a row from softPromoter table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 {
 
 ret->chrom = row[0];
 ret->chromStart = sqlUnsigned(row[1]);
 ret->chromEnd = sqlUnsigned(row[2]);
 ret->name = row[3];
 ret->score = sqlUnsigned(row[4]);
 ret->type = row[5];
 ret->origScore = atof(row[6]);
 ret->origName = row[7];
 ret->blockString = row[8];
 }
 
 struct softPromoter *softPromoterLoad(char **row)
 /* Load a softPromoter from row fetched with select * from softPromoter
  * from database.  Dispose of this with softPromoterFree(). */
 {
 struct softPromoter *ret;
 
 AllocVar(ret);
 ret->chrom = cloneString(row[0]);
 ret->chromStart = sqlUnsigned(row[1]);
 ret->chromEnd = sqlUnsigned(row[2]);
 ret->name = cloneString(row[3]);
 ret->score = sqlUnsigned(row[4]);
 ret->type = cloneString(row[5]);
 ret->origScore = atof(row[6]);
 ret->origName = cloneString(row[7]);
 ret->blockString = cloneString(row[8]);
 return ret;
 }
 
 struct softPromoter *softPromoterLoadAll(char *fileName) 
 /* Load all softPromoter from a tab-separated file.
  * Dispose of this with softPromoterFreeList(). */
 {
 struct softPromoter *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[9];
 
 while (lineFileRow(lf, row))
     {
     el = softPromoterLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct softPromoter *softPromoterCommaIn(char **pS, struct softPromoter *ret)
 /* Create a softPromoter out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new softPromoter */
 {
 char *s = *pS;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->chrom = sqlStringComma(&s);
 ret->chromStart = sqlUnsignedComma(&s);
 ret->chromEnd = sqlUnsignedComma(&s);
 ret->name = sqlStringComma(&s);
 ret->score = sqlUnsignedComma(&s);
 ret->type = sqlStringComma(&s);
 ret->origScore = sqlSignedComma(&s);
 ret->origName = sqlStringComma(&s);
 ret->blockString = sqlStringComma(&s);
 *pS = s;
 return ret;
 }
 
 void softPromoterFree(struct softPromoter **pEl)
 /* Free a single dynamically allocated softPromoter such as created
  * with softPromoterLoad(). */
 {
 struct softPromoter *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->chrom);
 freeMem(el->name);
 freeMem(el->type);
 freeMem(el->origName);
 freeMem(el->blockString);
 freez(pEl);
 }
 
 void softPromoterFreeList(struct softPromoter **pList)
 /* Free a list of dynamically allocated softPromoter's */
 {
 struct softPromoter *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     softPromoterFree(&el);
     }
 *pList = NULL;
 }
 
 void softPromoterOutput(struct softPromoter *el, FILE *f, char sep, char lastSep) 
 /* Print out softPromoter.  Separate fields with sep. Follow last field with lastSep. */
 {
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->chrom);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->chromStart);
 fputc(sep,f);
 fprintf(f, "%u", el->chromEnd);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->name);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->score);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->type);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%f", el->origScore);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->origName);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->blockString);
 if (sep == ',') fputc('"',f);
 fputc(lastSep,f);
 }