a44421a79fb36cc2036fe116b97ea3bc9590cd0c
braney
  Fri Dec 2 09:34:39 2011 -0800
removed rcsid (#295)
diff --git src/hg/lib/txCluster.c src/hg/lib/txCluster.c
index 1560051..37f5c1e 100644
--- src/hg/lib/txCluster.c
+++ src/hg/lib/txCluster.c
@@ -1,170 +1,169 @@
 /* txCluster.c was originally generated by the autoSql program, which also 
  * generated txCluster.h and txCluster.sql.  This module links the database and
  * the RAM representation of objects. */
 
 #include "common.h"
 #include "linefile.h"
 #include "dystring.h"
 #include "jksql.h"
 #include "txCluster.h"
 
-static char const rcsid[] = "$Id: txCluster.c,v 1.1 2007/02/26 10:29:00 kent Exp $";
 
 struct txCluster *txClusterLoad(char **row)
 /* Load a txCluster from row fetched with select * from txCluster
  * from database.  Dispose of this with txClusterFree(). */
 {
 struct txCluster *ret;
 
 AllocVar(ret);
 ret->txCount = sqlSigned(row[6]);
 ret->chrom = cloneString(row[0]);
 ret->chromStart = sqlSigned(row[1]);
 ret->chromEnd = sqlSigned(row[2]);
 ret->name = cloneString(row[3]);
 ret->score = sqlSigned(row[4]);
 safecpy(ret->strand, sizeof(ret->strand), row[5]);
 {
 int sizeOne;
 sqlStringDynamicArray(row[7], &ret->txArray, &sizeOne);
 assert(sizeOne == ret->txCount);
 }
 return ret;
 }
 
 struct txCluster *txClusterLoadAll(char *fileName) 
 /* Load all txCluster from a whitespace-separated file.
  * Dispose of this with txClusterFreeList(). */
 {
 struct txCluster *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[8];
 
 while (lineFileRow(lf, row))
     {
     el = txClusterLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct txCluster *txClusterLoadAllByChar(char *fileName, char chopper) 
 /* Load all txCluster from a chopper separated file.
  * Dispose of this with txClusterFreeList(). */
 {
 struct txCluster *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[8];
 
 while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
     {
     el = txClusterLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct txCluster *txClusterCommaIn(char **pS, struct txCluster *ret)
 /* Create a txCluster out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new txCluster */
 {
 char *s = *pS;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->chrom = sqlStringComma(&s);
 ret->chromStart = sqlSignedComma(&s);
 ret->chromEnd = sqlSignedComma(&s);
 ret->name = sqlStringComma(&s);
 ret->score = sqlSignedComma(&s);
 sqlFixedStringComma(&s, ret->strand, sizeof(ret->strand));
 ret->txCount = sqlSignedComma(&s);
 {
 int i;
 s = sqlEatChar(s, '{');
 AllocArray(ret->txArray, ret->txCount);
 for (i=0; i<ret->txCount; ++i)
     {
     ret->txArray[i] = sqlStringComma(&s);
     }
 s = sqlEatChar(s, '}');
 s = sqlEatChar(s, ',');
 }
 *pS = s;
 return ret;
 }
 
 void txClusterFree(struct txCluster **pEl)
 /* Free a single dynamically allocated txCluster such as created
  * with txClusterLoad(). */
 {
 struct txCluster *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->chrom);
 freeMem(el->name);
 /* All strings in txArray are allocated at once, so only need to free first. */
 if (el->txArray != NULL)
     freeMem(el->txArray[0]);
 freeMem(el->txArray);
 freez(pEl);
 }
 
 void txClusterFreeList(struct txCluster **pList)
 /* Free a list of dynamically allocated txCluster's */
 {
 struct txCluster *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     txClusterFree(&el);
     }
 *pList = NULL;
 }
 
 void txClusterOutput(struct txCluster *el, FILE *f, char sep, char lastSep) 
 /* Print out txCluster.  Separate fields with sep. Follow last field with lastSep. */
 {
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->chrom);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%d", el->chromStart);
 fputc(sep,f);
 fprintf(f, "%d", el->chromEnd);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->name);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%d", el->score);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->strand);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%d", el->txCount);
 fputc(sep,f);
 {
 int i;
 if (sep == ',') fputc('{',f);
 for (i=0; i<el->txCount; ++i)
     {
     if (sep == ',') fputc('"',f);
     fprintf(f, "%s", el->txArray[i]);
     if (sep == ',') fputc('"',f);
     fputc(',', f);
     }
 if (sep == ',') fputc('}',f);
 }
 fputc(lastSep,f);
 }
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */