a44421a79fb36cc2036fe116b97ea3bc9590cd0c
braney
  Fri Dec 2 09:34:39 2011 -0800
removed rcsid (#295)
diff --git src/hg/lib/ucscRetroOrtho.c src/hg/lib/ucscRetroOrtho.c
index daf4daa..fa6dcfe 100644
--- src/hg/lib/ucscRetroOrtho.c
+++ src/hg/lib/ucscRetroOrtho.c
@@ -1,189 +1,188 @@
 /* ucscRetroOrtho.c was originally generated by the autoSql program, which also 
  * generated ucscRetroOrtho.h and ucscRetroOrtho.sql.  This module links the database and
  * the RAM representation of objects. */
 
 #include "common.h"
 #include "linefile.h"
 #include "dystring.h"
 #include "jksql.h"
 #include "ucscRetroOrtho.h"
 
-static char const rcsid[] = "$Id:$";
 
 void ucscRetroOrthoStaticLoad(char **row, struct ucscRetroOrtho *ret)
 /* Load a row from ucscRetroOrtho table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 {
 
 ret->name = row[0];
 ret->db = row[1];
 ret->overlap = sqlSigned(row[2]);
 }
 
 struct ucscRetroOrtho *ucscRetroOrthoLoadByQuery(struct sqlConnection *conn, char *query)
 /* Load all ucscRetroOrtho from table that satisfy the query given.  
  * Where query is of the form 'select * from example where something=something'
  * or 'select example.* from example, anotherTable where example.something = 
  * anotherTable.something'.
  * Dispose of this with ucscRetroOrthoFreeList(). */
 {
 struct ucscRetroOrtho *list = NULL, *el;
 struct sqlResult *sr;
 char **row;
 
 sr = sqlGetResult(conn, query);
 while ((row = sqlNextRow(sr)) != NULL)
     {
     el = ucscRetroOrthoLoad(row);
     slAddHead(&list, el);
     }
 slReverse(&list);
 sqlFreeResult(&sr);
 return list;
 }
 
 void ucscRetroOrthoSaveToDb(struct sqlConnection *conn, struct ucscRetroOrtho *el, char *tableName, int updateSize)
 /* Save ucscRetroOrtho as a row to the table specified by tableName. 
  * As blob fields may be arbitrary size updateSize specifies the approx size
  * of a string that would contain the entire query. Arrays of native types are
  * converted to comma separated strings and loaded as such, User defined types are
  * inserted as NULL. Note that strings must be escaped to allow insertion into the database.
  * For example "autosql's features include" --> "autosql\'s features include" 
  * If worried about this use ucscRetroOrthoSaveToDbEscaped() */
 {
 struct dyString *update = newDyString(updateSize);
 dyStringPrintf(update, "insert into %s values ( '%s','%s',%d)", 
 	tableName,  el->name,  el->db,  el->overlap);
 sqlUpdate(conn, update->string);
 freeDyString(&update);
 }
 
 void ucscRetroOrthoSaveToDbEscaped(struct sqlConnection *conn, struct ucscRetroOrtho *el, char *tableName, int updateSize)
 /* Save ucscRetroOrtho as a row to the table specified by tableName. 
  * As blob fields may be arbitrary size updateSize specifies the approx size.
  * of a string that would contain the entire query. Automatically 
  * escapes all simple strings (not arrays of string) but may be slower than ucscRetroOrthoSaveToDb().
  * For example automatically copies and converts: 
  * "autosql's features include" --> "autosql\'s features include" 
  * before inserting into database. */ 
 {
 struct dyString *update = newDyString(updateSize);
 char  *name, *db;
 name = sqlEscapeString(el->name);
 db = sqlEscapeString(el->db);
 
 dyStringPrintf(update, "insert into %s values ( '%s','%s',%d)", 
 	tableName,  name,  db,  el->overlap);
 sqlUpdate(conn, update->string);
 freeDyString(&update);
 freez(&name);
 freez(&db);
 }
 
 struct ucscRetroOrtho *ucscRetroOrthoLoad(char **row)
 /* Load a ucscRetroOrtho from row fetched with select * from ucscRetroOrtho
  * from database.  Dispose of this with ucscRetroOrthoFree(). */
 {
 struct ucscRetroOrtho *ret;
 
 AllocVar(ret);
 ret->name = cloneString(row[0]);
 ret->db = cloneString(row[1]);
 ret->overlap = sqlSigned(row[2]);
 return ret;
 }
 
 struct ucscRetroOrtho *ucscRetroOrthoLoadAll(char *fileName) 
 /* Load all ucscRetroOrtho from a whitespace-separated file.
  * Dispose of this with ucscRetroOrthoFreeList(). */
 {
 struct ucscRetroOrtho *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[3];
 
 while (lineFileRow(lf, row))
     {
     el = ucscRetroOrthoLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct ucscRetroOrtho *ucscRetroOrthoLoadAllByChar(char *fileName, char chopper) 
 /* Load all ucscRetroOrtho from a chopper separated file.
  * Dispose of this with ucscRetroOrthoFreeList(). */
 {
 struct ucscRetroOrtho *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[3];
 
 while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
     {
     el = ucscRetroOrthoLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct ucscRetroOrtho *ucscRetroOrthoCommaIn(char **pS, struct ucscRetroOrtho *ret)
 /* Create a ucscRetroOrtho out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new ucscRetroOrtho */
 {
 char *s = *pS;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->name = sqlStringComma(&s);
 ret->db = sqlStringComma(&s);
 ret->overlap = sqlSignedComma(&s);
 *pS = s;
 return ret;
 }
 
 void ucscRetroOrthoFree(struct ucscRetroOrtho **pEl)
 /* Free a single dynamically allocated ucscRetroOrtho such as created
  * with ucscRetroOrthoLoad(). */
 {
 struct ucscRetroOrtho *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->name);
 freeMem(el->db);
 freez(pEl);
 }
 
 void ucscRetroOrthoFreeList(struct ucscRetroOrtho **pList)
 /* Free a list of dynamically allocated ucscRetroOrtho's */
 {
 struct ucscRetroOrtho *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     ucscRetroOrthoFree(&el);
     }
 *pList = NULL;
 }
 
 void ucscRetroOrthoOutput(struct ucscRetroOrtho *el, FILE *f, char sep, char lastSep) 
 /* Print out ucscRetroOrtho.  Separate fields with sep. Follow last field with lastSep. */
 {
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->name);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->db);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%d", el->overlap);
 fputc(lastSep,f);
 }
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */