a44421a79fb36cc2036fe116b97ea3bc9590cd0c
braney
  Fri Dec 2 09:34:39 2011 -0800
removed rcsid (#295)
diff --git src/hg/var/fixConrad.c src/hg/var/fixConrad.c
index 301124a..28e5baa 100644
--- src/hg/var/fixConrad.c
+++ src/hg/var/fixConrad.c
@@ -1,71 +1,70 @@
 /* fixConrad - Assign unique identifer to Conrad input. */
 
 #include "common.h"
 
 #include "chromInfo.h"
 #include "hdb.h"
 #include "linefile.h"
 #include "jksql.h"
 
-static char const rcsid[] = "$Id: fixConrad.c,v 1.3 2006/01/23 20:12:05 heather Exp $";
 
 int countByChrom[25];
 
 void usage()
 /* Explain usage and exit. */
 {
 errAbort(
   "fixConrad - Assign unique identifier to Conrad input\n"
   "usage:\n"
   "  fixConrad file\n");
 }
 
 
 int getChromIndex(char *chromString)
 /* there is probably a library function that does this... */
 {
     if (sameString(chromString, "X")) return 23;
     if (sameString(chromString, "Y")) return 24;
     if (sameString(chromString, "M")) return 25;
     return atoi(chromString);
 }
 
 void fixConrad(char *filename)
 /* fixConrad - read file. */
 {
 struct lineFile *lf = lineFileOpen(filename, TRUE);
 char *line;
 int lineSize;
 char *row[5];
 int wordCount;
 int chromInt = 0;
 char *chromName;
 
 while (lineFileNext(lf, &line, &lineSize))
     {
     wordCount = chopByWhite(line, row, ArraySize(row));
     chromName = cloneString(row[0]);
 
     stripString(row[0], "chr");
     chromInt = getChromIndex(row[0]);
     countByChrom[chromInt] = countByChrom[chromInt] + 1;
 
     printf("%s.%d\t%s\t+\t%s\t%s\t%s\t%s\t1\t%s,\t%s,\n", 
             chromName, countByChrom[chromInt], chromName, row[1], row[2], row[3], row[4], row[1], row[2]);
     }
 }
 
 int main(int argc, char *argv[])
 {
 int i;
 
 if (argc != 2)
     usage();
 
 for (i = 0; i++; i<25)
     countByChrom[i] = 0;
 
 fixConrad(argv[1]);
 
 return 0;
 }