a44421a79fb36cc2036fe116b97ea3bc9590cd0c
braney
  Fri Dec 2 09:34:39 2011 -0800
removed rcsid (#295)
diff --git src/lib/spacedSeed.c src/lib/spacedSeed.c
index 1544e27..169e223 100644
--- src/lib/spacedSeed.c
+++ src/lib/spacedSeed.c
@@ -1,66 +1,65 @@
 /* spacedSeed - stuff to help with spaced seeds for alignments. */
 
 #include "common.h"
 #include "spacedSeed.h"
 
-static char const rcsid[] = "$Id: spacedSeed.c,v 1.1 2005/01/10 00:02:37 kent Exp $";
 
 /* Seeds - the weight 9 and 11 seeds are from PatternHunter paper.
  * The weights 10,12,13,14,15,16,17 and 18 are from the Choi, Zeng,
  * and Zhang paper.  The others are just guesses. */
 
 char *spacedSeeds[] = {
     /*  0 */ "",
     /*  1 */ "1",
     /*  2 */ "11",
     /*  3 */ "1101",
     /*  4 */ "110101",
     /*  5 */ "1101011",
     /*  6 */ "111001011",
     /*  7 */ "1110010111",
     /*  8 */ "1110010100111",
     /*  9 */ "111001010011011",
     /* 10 */ "1101100011010111",
     /* 11 */ "111010010100110111",
     /* 12 */ "111010110100110111",
     /* 13 */ "11101011001100101111",
     /* 14 */ "111011100101100101111",
     /* 15 */ "11110010101011001101111",
 #ifdef EVER_NEEDED_IN_64_BIT_MACHINE
     /* 16 */ "111100110101011001101111",
     /* 17 */ "111101010111001101101111",
     /* 18 */ "1111011001110101011011111",
 #endif /* EVER_NEEDED_IN_64_BIT_MACHINE */
 };
 
 int spacedSeedMaxWeight()
 /* Return max weight of spaced seed. */
 {
 return ArraySize(spacedSeeds)-1;
 }
 
 int *spacedSeedOffsets(int weight)
 /* Return array with offsets for seed of given weight. */
 {
 char *seed;
 int *output, offset, outCount = 0, seedSize;
 
 assert(weight >= 1 && weight < ArraySize(spacedSeeds));
 seed = spacedSeeds[weight];
 seedSize = strlen(seed);
 AllocArray(output, weight);
 for (offset=0; offset<seedSize; ++offset)
     {
     if (seed[offset] == '1')
 	output[outCount++] = offset;
     }
 assert(outCount == weight);
 return output;
 }
 
 int spacedSeedSpan(int weight)
 /* Return span of seed of given weight */
 {
 return strlen(spacedSeeds[weight]);
 }