a44421a79fb36cc2036fe116b97ea3bc9590cd0c
braney
  Fri Dec 2 09:34:39 2011 -0800
removed rcsid (#295)
diff --git src/oneShot/preProcGgfAndy/preProcGgfAndy.c src/oneShot/preProcGgfAndy/preProcGgfAndy.c
index e45361a..03136dc 100644
--- src/oneShot/preProcGgfAndy/preProcGgfAndy.c
+++ src/oneShot/preProcGgfAndy/preProcGgfAndy.c
@@ -1,59 +1,58 @@
 /* preProcGgfAndy - Print CpG locs/stats to stdout for Andy Law's cpg-island
  * script (modified to use G-G&F obs/exp calc). */
 #include "common.h"
 #include "dnaseq.h"
 #include "fa.h"
 
-static char const rcsid[] = "$Id: preProcGgfAndy.c,v 1.1 2005/08/24 23:06:12 angie Exp $";
 
 void usage()
 /* Explain usage and exit. */
 {
 errAbort(
   "preProcGgfAndy - Print CpG locs/stats to stdout for Andy Law's cpg-island\n"
   "   script (modified to use G-G&F obs/exp calc)\n"
   "usage:\n"
   "   preProcGgfAndy file.fa\n");
 }
 
 void preProcGgfAndy(char *faName)
 /* preProcGgfAndy - Print CpG locs/stats to stdout for Andy Law's cpg-island 
  * script (modified to use G-G&F obs/exp calc). */
 {
 struct dnaSeq *seqList, *seq;
 seqList = faReadAllDna(faName);
 for (seq = seqList; seq != NULL; seq = seq->next)
     {
     int i = 0;
     int numC=0, numG=0;
     int size = 0;
     boolean wasC = FALSE;
     for (i=0;  i < seq->size;  i++)
 	{
 	DNA base = seq->dna[i];
 	boolean isC = (base == 'C') || (base == 'c');
 	boolean isG = (base == 'G') || (base == 'g');
 	if (isC)
 	    numC++;
 	if (isG)
 	    numG++;
 	size++;
 	if (isG && wasC)
 	    {
 	    /* i is 1-based offset for previous base (CpG start). */
 	    printf("%s\t%d\t%d\t%d\t%d\n", seq->name, i, numC, numG, size);
 	    numC = numG = size = 0;
 	    }
 	wasC = isC;
 	}    
     }
 }
 
 int main(int argc, char *argv[])
 /* Process command line. */
 {
 if (argc != 2)
     usage();
 preProcGgfAndy(argv[1]);
 return 0;
 }