a44421a79fb36cc2036fe116b97ea3bc9590cd0c
braney
  Fri Dec 2 09:34:39 2011 -0800
removed rcsid (#295)
diff --git src/utils/faFrag/faFrag.c src/utils/faFrag/faFrag.c
index 8b6f9c5..ea12d4f 100644
--- src/utils/faFrag/faFrag.c
+++ src/utils/faFrag/faFrag.c
@@ -1,56 +1,55 @@
 /* faFrag - Extract a piece of DNA from a .fa file.. */
 #include "common.h"
 #include "dnaseq.h"
 #include "fa.h"
 #include "options.h"
 
-static char const rcsid[] = "$Id: faFrag.c,v 1.5 2006/03/18 01:54:46 angie Exp $";
 
 void usage()
 /* Explain usage and exit. */
 {
 errAbort(
   "faFrag - Extract a piece of DNA from a .fa file.\n"
   "usage:\n"
   "   faFrag in.fa start end out.fa\n"
   "options:\n"
   "   -mixed - preserve mixed-case in FASTA file\n");
 }
 
 void faFrag(char *inName, int start, int end, char *outName, boolean mixed)
 /* faFrag - Extract a piece of DNA from a .fa file.. */
 {
 struct dnaSeq *seq;
 char name[512];
 
 if (start >= end)
     usage();
 if (mixed)
     seq = faReadAllMixed(inName);
 else
     seq = faReadAllDna(inName);
 if (seq->next != NULL)
     warn("More than one sequence in %s, just using first\n", inName);
 if (end > seq->size)
     {
     warn("%s only has %d bases, truncating", seq->name, seq->size);
     end = seq->size;
     if (start >= end)
         errAbort("Sorry, no sequence left after truncating");
     }
 sprintf(name, "%s:%d-%d", seq->name, start, end);
 faWrite(outName, name, seq->dna + start, end-start);
 printf("Wrote %d bases to %s\n", end-start, outName);
 }
 
 int main(int argc, char *argv[])
 /* Process command line. */
 {
 optionHash(&argc, argv);
 if (argc != 5)
     usage();
 if (!isdigit(argv[2][0]) || !isdigit(argv[3][0]))
     usage();
 faFrag(argv[1], atoi(argv[2]), atoi(argv[3]), argv[4], optionExists("mixed"));
 return 0;
 }