a44421a79fb36cc2036fe116b97ea3bc9590cd0c
braney
  Fri Dec 2 09:34:39 2011 -0800
removed rcsid (#295)
diff --git src/utils/faSimplify/faSimplify.c src/utils/faSimplify/faSimplify.c
index e5f73f0..5a9ab36 100644
--- src/utils/faSimplify/faSimplify.c
+++ src/utils/faSimplify/faSimplify.c
@@ -1,75 +1,74 @@
 /* faSimplify - Simplify fasta record headers. */
 #include "common.h"
 #include "linefile.h"
 #include "hash.h"
 #include "options.h"
 
-static char const rcsid[] = "$Id: faSimplify.c,v 1.1 2003/09/19 23:36:50 kent Exp $";
 
 void usage()
 /* Explain usage and exit. */
 {
 errAbort(
   "faSimplify - Simplify fasta record headers\n"
   "usage:\n"
   "   faSimplify in.fa startPat endPat out.fa\n"
   "This will write out the stuff between startPat and\n"
   "endPat\n"
   "options:\n"
   "   -prefix=XXX This will add XXX as a prefix\n"
   "   -suffix=XXX This will add YYY as a suffix\n"
   );
 }
 
 static struct optionSpec options[] = {
    {"prefix", OPTION_STRING},
    {"suffix", OPTION_STRING},
    {NULL, 0},
 };
 
 char *prefix = "";
 char *suffix = "";
 
 void faSimplify(char *inName, char *startPat, char *endPat, char *outName)
 /* faFlyBaseToUcsc - Convert Flybase peptide fasta file to UCSC format. */
 {
 struct lineFile *lf = lineFileOpen(inName, TRUE);
 FILE *f = mustOpen(outName, "w");
 char *line;
 int startSize = strlen(startPat);
 
 while (lineFileNext(lf, &line, NULL))
     {
     if (line[0] == '>')
         {
 	char *s = stringIn(startPat, line), *e;
 	if (s == NULL)
 	   errAbort("No %s line %d of %s", startPat, lf->lineIx, lf->fileName);
 	s += startSize;
 	e = stringIn(endPat, s);
 	if (e == NULL)
 	   errAbort("No %s line %d of %s", endPat, lf->lineIx, lf->fileName);
 	*e = 0;
 	fprintf(f, ">%s%s%s\n", prefix, s, suffix);
 	}
     else
         {
 	fprintf(f, "%s\n", line);
 	}
     }
 carefulClose(&f);
 lineFileClose(&lf);
 }
 
 
 int main(int argc, char *argv[])
 /* Process command line. */
 {
 optionInit(&argc, argv, options);
 if (argc != 5)
     usage();
 prefix = optionVal("prefix", prefix);
 suffix = optionVal("suffix", suffix);
 faSimplify(argv[1], argv[2], argv[3], argv[4]);
 return 0;
 }