a44421a79fb36cc2036fe116b97ea3bc9590cd0c
braney
  Fri Dec 2 09:34:39 2011 -0800
removed rcsid (#295)
diff --git src/utils/raFromTab/raFromTab.c src/utils/raFromTab/raFromTab.c
index a517d5b..f8bc511 100644
--- src/utils/raFromTab/raFromTab.c
+++ src/utils/raFromTab/raFromTab.c
@@ -1,93 +1,92 @@
 /* raFromTab - Convert tab-delimited file to ra file.. */
 #include "common.h"
 #include "linefile.h"
 #include "hash.h"
 #include "options.h"
 #include "asParse.h"
 #include "obscure.h"
 
-static char const rcsid[] = "$Id: raFromTab.c,v 1.2 2007/03/13 01:41:53 kent Exp $";
 
 struct slName *colList = NULL;
 boolean space;
 
 void usage()
 /* Explain usage and exit. */
 {
 errAbort(
   "raFromTab - Convert tab-delimited file to ra file.\n"
   "usage:\n"
   "   raFromTab in.tab out.ra\n"
   "required flags - one of:\n"
   "   as=file.as - Use autoSql file for column labels\n"
   "   cols=a,b,c - Specify column labels as comma-separated list\n"
   "options:\n"
   "   -space - Use whitespace rather than tab as field separator\n"
   );
 }
 
 static struct optionSpec options[] = {
    {"as", OPTION_STRING},
    {"cols", OPTION_STRING},
    {"space", OPTION_BOOLEAN},
    {NULL, 0},
 };
 
 void rowOut(char **row, FILE *f)
 /* Write out row. */
 {
 int i;
 struct slName *col;
 for (i=0, col=colList; col != NULL; col=col->next, ++i)
     fprintf(f, "%s %s\n", col->name, row[i]);
 fprintf(f, "\n");
 }
 
 void raFromTab(char *inFile, char *outFile)
 /* raFromTab - Convert tab-delimited file to ra file.. */
 {
 struct lineFile *lf = lineFileOpen(inFile, TRUE);
 FILE *f = mustOpen(outFile, "w");
 int rowSize = slCount(colList);
 char *row[rowSize];
 if (space)
     {
     while (lineFileRow(lf, row))
 	rowOut(row, f);
     }
 else
     {
     while (lineFileRowTab(lf, row))
         rowOut(row, f);
     }
 carefulClose(&f);
 }
 
 int main(int argc, char *argv[])
 /* Process command line. */
 {
 optionInit(&argc, argv, options);
 if (argc != 3)
     usage();
 if (optionExists("cols"))
     colList = commaSepToSlNames(optionVal("cols", NULL));
 char *fileName = optionVal("as", NULL);
 if (fileName != NULL)
     {
     if (colList != NULL)
         errAbort("Use just one of options  'cols' and 'as' please.");
     struct asObject *objList = asParseFile(fileName);
     if (objList == NULL)
         errAbort("%s is empty", fileName);
     if (objList->next != NULL)
         verbose(1, "%s has multiple definitions, just using first.\n", fileName);
     struct asColumn *col;
     for (col = objList->columnList; col != NULL; col = col->next)
 	slNameAddTail(&colList, col->name);
     }
 if (colList == NULL)
    errAbort("Please use either 'cols' or 'as' option");
 space = optionExists("space");
 raFromTab(argv[1], argv[2]);
 return 0;
 }