File Changes for cricket

v260_preview2 to v260_base (2011-11-22 to 2011-12-06) v260

• src/hg/makeDb/doc/encodeDccHg19/wgEncodeHaibMethyl450.release1.notes
  • lines changed 164, context: html, text, full: html, text
    Adding notes file for HaibMethyl450
  • lines changed 6, context: html, text, full: html, text
    Adding supplemental
  • lines changed 3, context: html, text, full: html, text
    updating size of supplemental
• src/hg/makeDb/doc/encodeDccHg19/wgEncodeRikenCage.release2.notes
  • lines changed 117, context: html, text, full: html, text
    Fixed the release notes to take out clusters
• src/hg/makeDb/trackDb/cv/alpha/cv.ra
  • lines changed 36, context: html, text, full: html, text
    Trying to add the RNA Treatments
• src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra
  • lines changed 3, context: html, text, full: html, text
    Removing hg18 HAIB TFBS track
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/makefile
  • lines changed 1, context: html, text, full: html, text
    Adding Gencode V9 to the makefile
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGencodeV9.ra
  • lines changed 276, context: html, text, full: html, text
    Adding the metaData for GencodeV9
  • lines changed 46, context: html, text, full: html, text
    Added an object, removed md5sums and subIds, added dccAccession
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethyl450.ra
  • lines changed 170, context: html, text, full: html, text
    Ticket 4234, added dccAccessions, added an expVar, changed the labels for 116 from Stanford to HAIB, fixed some spacing issues in the html
  • lines changed 4, context: html, text, full: html, text
    Adding replicate number back to the Stanford sample
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra
  • lines changed 2, context: html, text, full: html, text
    Removing the -m for Caltech, these are only human, the lab must have used the wrong DAF
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRikenCage.ra
  • lines changed 63, context: html, text, full: html, text
    Changes according to Katrina in ticket 2020
  • lines changed 42, context: html, text, full: html, text
    Adding the metaData link and changing the TssHmm files to say bed
  • lines changed 1323, context: html, text, full: html, text
    Adding back the clusters as .bed files and attic
  • lines changed 155, context: html, text, full: html, text
    Added back the TssHmm bedRnaElements
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.new.html
  • lines changed 2, context: html, text, full: html, text
    Added a line about metaData arrow in display
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.new.html
  • lines changed 1, context: html, text, full: html, text
    Added a line about metaData arrow in display
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV9.html
  • lines changed 1, context: html, text, full: html, text
    Fixing Version 7 to Version 9
  • lines changed 1, context: html, text, full: html, text
    Added a line about metaData arrow in display
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV9.ra
  • lines changed 1, context: html, text, full: html, text
    Added an object, removed md5sums and subIds, added dccAccession
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGisChiaPet.html
  • lines changed 1, context: html, text, full: html, text
    Added a line about metaData arrow in display
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGisRnaPet.release2.html
  • lines changed 1, context: html, text, full: html, text
    Added a line about metaData arrow in display
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibGenotype.new.html
  • lines changed 2, context: html, text, full: html, text
    Added a line about metaData arrow in display
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethyl27.html
  • lines changed 1, context: html, text, full: html, text
    The link to the cell culture protocols was incorrect
  • lines changed 2, context: html, text, full: html, text
    Added a line about metaData arrow in display
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethyl450.html
  • lines changed 3, context: html, text, full: html, text
    Ticket 4234, added dccAccessions, added an expVar, changed the labels for 116 from Stanford to HAIB, fixed some spacing issues in the html
  • lines changed 1, context: html, text, full: html, text
    Adding replicate number back to the Stanford sample
  • lines changed 3, context: html, text, full: html, text
    Changed the links to the supplemental directory and changed the order of the treatments to be alphabetical
  • lines changed 1, context: html, text, full: html, text
    Fixed a broken link
  • lines changed 7, context: html, text, full: html, text
    Ticket 4324 addressing Jacobs requests
  • lines changed 1, context: html, text, full: html, text
    Changed to past tense at jacobs request
  • lines changed 1, context: html, text, full: html, text
    Adding the line about the metaData
  • lines changed 1, context: html, text, full: html, text
    The link to the cell culture protocols was incorrect
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethyl450.ra
  • lines changed 4, context: html, text, full: html, text
    Ticket 4234, added dccAccessions, added an expVar, changed the labels for 116 from Stanford to HAIB, fixed some spacing issues in the html
  • lines changed 4, context: html, text, full: html, text
    Adding replicate number back to the Stanford sample
  • lines changed 1, context: html, text, full: html, text
    Changed the links to the supplemental directory and changed the order of the treatments to be alphabetical
  • lines changed 61, context: html, text, full: html, text
    Changed the sort order for Vanessa 4234
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylRrbs.new.html
  • lines changed 6, context: html, text, full: html, text
    Added a line about metaData arrow in display
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibRnaSeq.html
  • lines changed 1, context: html, text, full: html, text
    Added a line about metaData arrow in display
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibRnaSeq.new.html
  • lines changed 2, context: html, text, full: html, text
    Added a line about metaData arrow in display
• src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.new.html
  • lines changed 24, context: html, text, full: html, text
    Changes for Katrina ticket 2020, note 48
  • lines changed 2, context: html, text, full: html, text
    Adding TSS HMM comments
  • lines changed 7, context: html, text, full: html, text
    Adding changes acording to Katrina's requests ticket 2020
  • lines changed 2, context: html, text, full: html, text
    Ticket 2020 Addressing Katrina Requests
  • lines changed 2, context: html, text, full: html, text
    Changes according to Katrina in ticket 2020
  • lines changed 2, context: html, text, full: html, text
    Adding the metaData link and changing the TssHmm files to say bed
  • lines changed 6, context: html, text, full: html, text
    Adding back the clusters as .bed files and attic
• src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.new.ra
  • lines changed 66, context: html, text, full: html, text
    Changes according to Katrina in ticket 2020
  • lines changed 1, context: html, text, full: html, text
    Ticket 2020 Changes for katrina
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUncBsuProtFasp.html
  • lines changed 1, context: html, text, full: html, text
    Added a line about metaData arrow in display
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwAffyExonArray.new.html
  • lines changed 1, context: html, text, full: html, text
    Added a line about metaData arrow in display