Commits for cricket

v259_base to v260_preview (2011-11-07 to 2011-11-15) v260

• adding the md5sums and the dccaccessions
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRikenCage.ra - lines changed 127, context: html, text, full: html, text
• Added TssHmm files
  • src/hg/makeDb/doc/encodeDccHg19/wgEncodeRikenCage.release2.notes - lines changed 50, context: html, text, full: html, text
• Version 1.9 of RNA PET DAF
  • src/hg/encode/DAFs/3.0/hg19/wgEncodeGisRnaPet.daf - lines changed 4, context: html, text, full: html, text
• Added Caltech fastqs
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra - lines changed 93, context: html, text, full: html, text
• These programs or files are obsolete and should not be being used
  • src/hg/encode/encodeValidate/config/expVars.ra - lines changed 196, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/config/hg18_chromInfo.txt - lines changed 49, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/config/pi.ra - lines changed 181, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/doEncodeReport.pl - lines changed 535, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/doReport.csh - lines changed 55, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/manual.all.txt - lines changed 22, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/obsolete/doEncodeReport.pl - lines changed 535, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/obsolete/doReport.csh - lines changed 55, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/obsolete/expVars.ra - lines changed 196, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/obsolete/hg18_chromInfo.txt - lines changed 49, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/obsolete/manual.all.txt - lines changed 22, context: html, text, full: html, text
  • src/hg/encode/encodeValidate/obsolete/pi.ra - lines changed 181, context: html, text, full: html, text
• Use the RGB settings
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethyl450.ra - lines changed 16, context: html, text, full: html, text
• adding some geo accession numbers
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeDukeAffyExon.ra - lines changed 69, context: html, text, full: html, text
• Adding subgroup for obtainedBy and had a renaming go wrong
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethyl450.ra - lines changed 44, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethyl450.ra - lines changed 70, context: html, text, full: html, text
• Spelling
  • src/hg/encode/metaCheck/README.txt - lines changed 1, context: html, text, full: html, text
• Changed a short label
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.new.ra - lines changed 1, context: html, text, full: html, text
• Taking the .new offline until make works
  • src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 2, context: html, text, full: html, text