Commits for chinhli

v260_preview to v260_preview2 (2011-11-15 to 2011-11-22) v260

• redmine track #5959 pairwise alignment : loxAfr3 <-> monDom5
  • src/hg/makeDb/doc/loxAfr3.txt - lines changed 20, context: html, text, full: html, text
  • src/hg/makeDb/doc/monDom5.txt - lines changed 67, context: html, text, full: html, text
• Remove the last sentnece 'From which all the raw data can be downloaded'
  • src/hg/makeDb/trackDb/human/hg19/lincRNAs.html - lines changed 2, context: html, text, full: html, text
• Sort rmsk tables by chromStart (redmine Bug #5557)
  • src/hg/makeDb/doc/nomLeu1.txt - lines changed 18, context: html, text, full: html, text
• Document blat server assignment for gibbon nonLeu1
  • src/hg/makeDb/doc/nomLeu1.txt - lines changed 14, context: html, text, full: html, text
• Set the priority and matrix value based on chainNet.pl and findScore.pl results.
  • src/hg/makeDb/trackDb/gibbon/trackDb.chainNet.ra - lines changed 8, context: html, text, full: html, text
• Document how to set gibbon/trackDb.chainNet.ra
  • src/hg/makeDb/doc/nomLeu1.txt - lines changed 18, context: html, text, full: html, text
• Set correct priority and matrix of gibbon nomLeu1 in hg19.
  • src/hg/makeDb/trackDb/human/trackDb.chainNet.ra - lines changed 6, context: html, text, full: html, text
• Set chainNet priority and matrix values for loxAfr3 vs. monDom5.
  • src/hg/makeDb/doc/loxAfr3.txt - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/doc/monDom5.txt - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/elephant/trackDb.chainNet.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/opossum/trackDb.chainNet.ra - lines changed 6, context: html, text, full: html, text