File Changes for hiram
switch to commits view, user indexv260_preview to v260_preview2 (2011-11-15 to 2011-11-22) v260
- src/hg/htdocs/images/phylo/gorGor3_11way.png
- lines changed 0, context: html, text, full: html, text
phylo tree for Gorilla 11-way primate alignment
- src/hg/lib/hgFind.c
- lines changed 12, context: html, text, full: html, text
allow refLink searches to work when accessions have version numbers (ignore the accession version number) RedMine issue 6040
- src/hg/makeDb/doc/anoCar2.txt
- lines changed 2, context: html, text, full: html, text
add link to WGS Traces information for these assemblies
- src/hg/makeDb/doc/calJac3.txt
- lines changed 4, context: html, text, full: html, text
add link to WGS Traces information for these assemblies
- src/hg/makeDb/doc/danRer7.txt
- lines changed 2, context: html, text, full: html, text
add link to WGS Traces information for these assemblies
- src/hg/makeDb/doc/fr3.txt
- lines changed 236, context: html, text, full: html, text
initial genome build with repeat masker, simple repeats, and gaps fixed up
- lines changed 123, context: html, text, full: html, text
windowMasker and blat server now running
- src/hg/makeDb/doc/gorGor3.txt
- lines changed 31, context: html, text, full: html, text
running synNet maf split for 11-way alignment
- src/hg/makeDb/doc/melGal1.txt
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add link to WGS Traces information for these assemblies
- src/hg/makeDb/doc/micMur1.txt
- lines changed 3, context: html, text, full: html, text
add link to WGS Traces information for these assemblies
- src/hg/makeDb/doc/otoGar1.txt
- lines changed 3, context: html, text, full: html, text
add link to WGS Traces information for these assemblies
- src/hg/makeDb/doc/panTro3.txt
- lines changed 2, context: html, text, full: html, text
add link to WGS Traces information for these assemblies
- src/hg/makeDb/doc/papHam1.txt
- lines changed 193, context: html, text, full: html, text
catch up some ancient instructions for Baboon
- lines changed 2, context: html, text, full: html, text
add link to WGS Traces information for these assemblies
- src/hg/makeDb/doc/ponAbe2.txt
- lines changed 2, context: html, text, full: html, text
add link to WGS Traces information for these assemblies
- src/hg/makeDb/doc/rheMac2.txt
- lines changed 3, context: html, text, full: html, text
add link to WGS Traces information for these assemblies
- src/hg/makeDb/doc/tarSyr1.txt
- lines changed 3, context: html, text, full: html, text
add link to WGS Traces information for these assemblies
- src/hg/makeDb/genbank/etc/genbank.conf
- lines changed 1, context: html, text, full: html, text
no refseq natives for gorGor3
- lines changed 16, context: html, text, full: html, text
adding definitions for fr3 Fugu
- src/hg/makeDb/schema/all.joiner
- lines changed 5, context: html, text, full: html, text
eliminate felCat3 from identifier ensemblTranscriptId checks
- src/hg/makeDb/trackDb/fugu/fr3/description.html
- lines changed 129, context: html, text, full: html, text
initial files from makeGenomeDb.pl
- src/hg/makeDb/trackDb/fugu/fr3/gap.html
- lines changed 64, context: html, text, full: html, text
initial files from makeGenomeDb.pl
- src/hg/makeDb/trackDb/fugu/fr3/gold.html
- lines changed 23, context: html, text, full: html, text
initial files from makeGenomeDb.pl
- src/hg/makeDb/trackDb/fugu/fr3/trackDb.ra
- lines changed 8, context: html, text, full: html, text
initial files from makeGenomeDb.pl
- lines changed 6, context: html, text, full: html, text
proper searching for gold table
- src/hg/makeDb/trackDb/gibbon/nomLeu1/trackDb.ra
- lines changed 32, context: html, text, full: html, text
remove all_mrna and all_est and fixup gold search
- src/hg/makeDb/trackDb/gibbon/trackDb.chainNet.ra
- lines changed 8, context: html, text, full: html, text
overrides for hg19 and gorGor3
- src/hg/makeDb/trackDb/gibbon/trackDb.ra
- lines changed 3, context: html, text, full: html, text
overrides for hg19 and gorGor3
- src/hg/makeDb/trackDb/gorilla/gorGor3/description.html
- lines changed 4, context: html, text, full: html, text
add a two item name between region display example
- lines changed 4, context: html, text, full: html, text
indicate NM version number searches ignore the version extension
- src/hg/makeDb/trackDb/gorilla/gorGor3/trackDb.chainNet.ra
- lines changed 40, context: html, text, full: html, text
adding chainNet overrides and proper search for gold track
- src/hg/makeDb/trackDb/gorilla/gorGor3/trackDb.ra
- lines changed 7, context: html, text, full: html, text
adding proper search rule for gold table
- lines changed 7, context: html, text, full: html, text
adding chainNet overrides and proper search for gold track
- src/hg/makeDb/trackDb/human/hg19/altSeqComposite5.ra
- lines changed 2, context: html, text, full: html, text
fixup URL for alternate sequence
- src/hg/makeDb/trackDb/makefile
- lines changed 1, context: html, text, full: html, text
adding fr3 fugu to the build
- src/hg/makeDb/trackDb/orangutan/trackDb.chainNet.ra
- lines changed 4, context: html, text, full: html, text
set priorities for gorGor3 chain net tracks
- src/hg/makeDb/trackDb/rhesus/trackDb.chainNet.ra
- lines changed 4, context: html, text, full: html, text
set priorities for gorGor3 chain net tracks
- src/hg/makeDb/trackDb/xenTro/xenTro3/cons9way.html
- lines changed 8, context: html, text, full: html, text
clarify language issues and formatting
- src/hg/utils/automation/doRepeatMasker.pl
- lines changed 16, context: html, text, full: html, text
load a sorted fa.out file to satisify the QA ordered table check
- lines changed 1, context: html, text, full: html, text
one line too much in the head to sorted operation
- src/hg/utils/automation/makeGenomeDb.pl
- lines changed 37, context: html, text, full: html, text
eliminate teh obsolete all_mrna and all_est entries in the initial trackDb.ra file
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