File Changes for steve

v260_preview to v260_preview2 (2011-11-15 to 2011-11-22) v260

• src/hg/makeDb/genbank/etc/hgwbeta.dbs
  • lines changed 2, context: html, text, full: html, text
    Added gorGor3 and nomLeu1
• src/hg/makeDb/trackDb/chimp/trackDb.chainNet.ra
  • lines changed 4, context: html, text, full: html, text
    Added override section for gorGor3. Added shortLabel tag to gorGor1 override section.
  • lines changed 1, context: html, text, full: html, text
    Added matrix line to gorGor3 override section so chain/net description page matches results of getMatrixLines.csh
• src/hg/makeDb/trackDb/gibbon/nomLeu1/description.html
  • lines changed 3, context: html, text, full: html, text
    Changed the URL to NCBI to a simpler, yet still-correct one. Fixed an html formatting error.
• src/hg/makeDb/trackDb/gibbon/nomLeu1/gap.html
  • lines changed 16, context: html, text, full: html, text
    Rearranged first sentence. Added links to NCBI, WashU and Baylor.
• src/hg/makeDb/trackDb/gibbon/nomLeu1/gold.html
  • lines changed 20, context: html, text, full: html, text
    Rearranged first sentence. Added links to NCBI, WashU and Baylor. Made other minor formatting changes.
• src/hg/makeDb/trackDb/gibbon/trackDb.chainNet.ra
  • lines changed 1, context: html, text, full: html, text
    Removed blank line from the top of the file
• src/hg/makeDb/trackDb/gorilla/gorGor3/description.html
  • lines changed 1, context: html, text, full: html, text
    Changed the URL to NCBI to a simpler, yet still-correct one
• src/hg/makeDb/trackDb/gorilla/gorGor3/gap.html
  • lines changed 10, context: html, text, full: html, text
    Changed the structure of the first sentence and included links to the Wellcome Trust Sanger Institute. Made various formatting corrections.
• src/hg/makeDb/trackDb/gorilla/gorGor3/gold.html
  • lines changed 3, context: html, text, full: html, text
    Moved a period from inside to outside a hyperlink. Removed an unnecessary period. Italicized the species name.
  • lines changed 1, context: html, text, full: html, text
    Removed an unnecessary period
  • lines changed 1, context: html, text, full: html, text
    Changed the URL to NCBI to a simpler, yet still-correct one
• src/hg/makeDb/trackDb/gorilla/gorGor3/trackDb.chainNet.ra
  • lines changed 2, context: html, text, full: html, text
    Added matrix line to calJac3 override section so chain/net description page matches results of getMatrixLines.csh
• src/hg/makeDb/trackDb/human/hg19/trackDb.ra
  • lines changed 28, context: html, text, full: html, text
    Changed 'bosTau4' to 'bosTau6' in placental mammal section. Added oviAri1 to placental mammal section.
  • lines changed 43, context: html, text, full: html, text
    Changed 'xenTro2' to 'xenTro3' in vertebrate section. Added melGal1 to vertebrate section.
• src/hg/makeDb/trackDb/human/trackDb.chainNet.ra
  • lines changed 4, context: html, text, full: html, text
    Added override section for gorGor3. Added shortLabel tag to gorGor1 override section.
  • lines changed 1, context: html, text, full: html, text
    Added matrix line to gorGor3 override section so chain/net description page matches results of getMatrixLines.csh
• src/hg/makeDb/trackDb/marmoset/trackDb.chainNet.ra
  • lines changed 4, context: html, text, full: html, text
    Added override section for gorGor3. Added shortLabel tag to gorGor2 override section.
  • lines changed 1, context: html, text, full: html, text
    Added matrix line to gorGor3 override section so chain/net description page matches results of getMatrixLines.csh
• src/hg/makeDb/trackDb/mrna.html
  • lines changed 2, context: html, text, full: html, text
    Changed capitalization of journal article title to match actual journal article. Journal article URL was being redirected. Replaced the URL with the new target.
• src/hg/makeDb/trackDb/nestedRepeats.html
  • lines changed 5, context: html, text, full: html, text
    Corrected 'RepBase' to 'Repbase Update'. Link to Repbase Update was being redirected, so replaced the URL with the new target. Corrected capitalization of journal article title.
• src/hg/makeDb/trackDb/rmsk.html
  • lines changed 5, context: html, text, full: html, text
    Corrected 'RepBase' to 'Repbase Update'. Link to Repbase Update was being redirected, so replaced the URL with the new target. Corrected capitalization of journal article title.
• src/hg/makeDb/trackDb/xenTro/xenTro3/description.html
  • lines changed 2, context: html, text, full: html, text
    Removed '.7' from gateway page sample query
• src/hg/makeDb/trackDb/xenoMrna.html
  • lines changed 2, context: html, text, full: html, text
    Changed capitalization of journal article title to match actual journal article. Journal article URL was being redirected. Replaced the URL with the new target.
• src/hg/makeDb/trackDb/xenoRefGene.html
  • lines changed 1, context: html, text, full: html, text
    Adjusted capitalization of journal article title to match actual journal article
  • lines changed 1, context: html, text, full: html, text
    Journal article URL was being redirected. Replaced URL with the new target.