6e23c5700ff2d2d1ade34de13cddfd3c2bf8ec3a
wong
  Mon Nov 14 17:00:42 2011 -0800
reworked the makefiles to allow for a split pipeline
diff --git src/inc/common.mk src/inc/common.mk
index 43083e8..5a4fef6 100644
--- src/inc/common.mk
+++ src/inc/common.mk
@@ -188,18 +188,28 @@
 endif
 LOWELAB_DEFS=${LOWELAB_DEF} ${LOWELAB_WIKI_DEF}
 
 ifdef LOWELAB
     ifeq (${SCRIPTS},/cluster/bin/scripts)
         SCRIPTS=${HOME}/scripts
     endif
     ifeq (${CGI_BIN},/usr/local/apache/cgi-bin)
         CGI_BIN=/www/cgi-bin
     endif
     ifeq (${DOCUMENTROOT},/usr/local/apache/htdocs)
         DOCUMENTROOT=/www/browser-docs
     endif
 endif
 
+#ENCODE COMMON VARIABLES
+CONFIG_FILES = \
+	fields.ra \
+	labs.ra
+CV = cv.ra
+CVDIR=${HOME}/kent/src/hg/makeDb/trackDb/cv/alpha
+PIPELINE_PATH=/hive/groups/encode/dcc/pipeline
+CONFIG_DIR = ${PIPELINE_PATH}/${PIPELINE_DIR}/config
+ENCODEDCC_DIR = ${PIPELINE_PATH}/downloads/encodeDCC
+
 %.o: %.c
 	${CC} ${COPT} ${CFLAGS} ${HG_DEFS} ${LOWELAB_DEFS} ${HG_WARN} ${HG_INC} ${XINC} -o $@ -c $<