File Changes for braney
switch to commits view, user indexv261_preview2 to v261_base (2011-12-20 to 2012-01-03) v261
- src/hg/inc/versionInfo.h
- src/hg/makeDb/genbank/etc/align.dbs
- lines changed 12, context: html, text, full: html, text
drop the unused assemblies #6358
- lines changed 12, context: html, text, full: html, text
purge assemblies from active align list #6358. Also add back hg15test to genbank.conf per Mark
- src/hg/makeDb/genbank/etc/genbank.conf
- lines changed 458, context: html, text, full: html, text
drop inactive assemblies #6358
- lines changed 18, context: html, text, full: html, text
purge assemblies from active align list #6358. Also add back hg15test to genbank.conf per Mark
- lines changed 5, context: html, text, full: html, text
oops, had some truncated lines in last checkin #6358
- lines changed 221, context: html, text, full: html, text
follow more consistent rules about which assemblies fall into which class (low-coverage, well-ordered, finished) #6250
- lines changed 94, context: html, text, full: html, text
oops, typo... lowcover should be lowCover (#6250)
- src/hg/makeDb/genbank/etc/hgwdev.dbs
- lines changed 12, context: html, text, full: html, text
drop the unused assemblies #6358
- lines changed 12, context: html, text, full: html, text
purge assemblies from active align list #6358. Also add back hg15test to genbank.conf per Mark
- src/hg/makeDb/genbank/etc/ignore.idx
- lines changed 1, context: html, text, full: html, text
add an mRNA that changed from pig to panda. Simple mistake, eh?
- src/hg/makeDb/trackDb/human/hg19/trackDb.ra
- src/hg/pslCDnaFilter/tests/expected/blackListTest/filt.out
- lines changed 6, context: html, text, full: html, text
tests for the new functions of pslCDnaFilter, and a fix to blackList.c that I discovered when creating the tests ;-)
- src/hg/pslCDnaFilter/tests/expected/blackListTest/keep.psl
- lines changed 397, context: html, text, full: html, text
tests for the new functions of pslCDnaFilter, and a fix to blackList.c that I discovered when creating the tests ;-)
- src/hg/pslCDnaFilter/tests/expected/decayMinCoverTest/filt.out
- lines changed 6, context: html, text, full: html, text
tests for the new functions of pslCDnaFilter, and a fix to blackList.c that I discovered when creating the tests ;-)
- lines changed 3, context: html, text, full: html, text
added some more interesting psl's to the decayMinCoverTest
- src/hg/pslCDnaFilter/tests/expected/decayMinCoverTest/keep.psl
- lines changed 84, context: html, text, full: html, text
tests for the new functions of pslCDnaFilter, and a fix to blackList.c that I discovered when creating the tests ;-)
- lines changed 50, context: html, text, full: html, text
added some more interesting psl's to the decayMinCoverTest
- src/hg/pslCDnaFilter/tests/input/blackList.psl
- lines changed 478, context: html, text, full: html, text
tests for the new functions of pslCDnaFilter, and a fix to blackList.c that I discovered when creating the tests ;-)
- src/hg/pslCDnaFilter/tests/input/blackList.txt
- lines changed 3, context: html, text, full: html, text
tests for the new functions of pslCDnaFilter, and a fix to blackList.c that I discovered when creating the tests ;-)
- src/hg/pslCDnaFilter/tests/input/decayMinCover.psl
- lines changed 573, context: html, text, full: html, text
added some more interesting psl's to the decayMinCoverTest
- src/hg/pslCDnaFilter/tests/makefile
- lines changed 7, context: html, text, full: html, text
oops... need the makefile for the tests
- lines changed 1, context: html, text, full: html, text
added some more interesting psl's to the decayMinCoverTest
- src/lib/blackList.c
- lines changed 4, context: html, text, full: html, text
tests for the new functions of pslCDnaFilter, and a fix to blackList.c that I discovered when creating the tests ;-)
- src/utils/qa/weeklybld/buildEnv.csh
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