39c142658bbcd0d9fd2725ac00eceb7d3f54703e
angie
  Wed Dec 7 09:43:46 2011 -0800
Feature #3710 (vcfTabix UI): describe QUAL using the same words as in hgc, as Katrina suggests.
diff --git src/hg/lib/vcfUi.c src/hg/lib/vcfUi.c
index 10b37e7..859455b 100644
--- src/hg/lib/vcfUi.c
+++ src/hg/lib/vcfUi.c
@@ -223,47 +223,47 @@
 vcfCfgHapClusterColor(cart, tdb, name, compositeLevel);
 vcfCfgHapClusterTreeAngle(cart, tdb, name, compositeLevel);
 vcfCfgHapClusterHeight(cart, tdb, vcff, name, compositeLevel);
 puts("<BR>");
 }
 
 static void vcfCfgMinQual(struct cart *cart, struct trackDb *tdb, struct vcfFile *vcff,
 			  char *name, boolean compositeLevel)
 /* If checkbox is checked, apply minimum value filter to QUAL column. */
 {
 char cartVar[1024];
 safef(cartVar, sizeof(cartVar), "%s." VCF_APPLY_MIN_QUAL_VAR, name);
 boolean applyFilter = cartUsualBooleanClosestToHome(cart, tdb, compositeLevel,
 					VCF_APPLY_MIN_QUAL_VAR, VCF_DEFAULT_APPLY_MIN_QUAL);
 cgiMakeCheckBox(cartVar, applyFilter);
-printf("<B>Exclude items with QUAL score less than</B>\n");
+printf("<B>Exclude variants with Quality/confidence score (QUAL) score less than</B>\n");
 double minQual = cartUsualDoubleClosestToHome(cart, tdb, compositeLevel, VCF_MIN_QUAL_VAR,
 					      VCF_DEFAULT_MIN_QUAL);
 safef(cartVar, sizeof(cartVar), "%s." VCF_MIN_QUAL_VAR, name);
 cgiMakeDoubleVar(cartVar, minQual, 10);
 printf("<BR>\n");
 }
 
 static void vcfCfgFilterColumn(struct cart *cart, struct trackDb *tdb, struct vcfFile *vcff,
 			       char *name, boolean compositeLevel)
 /* Show controls for filtering by value of VCF's FILTER column, which uses values defined
  * in the header. */
 {
 int filterCount = slCount(vcff->filterDefs);
 if (filterCount < 1)
     return;
-printf("<B>Exclude items with these FILTER values:</B><BR>\n");
+printf("<B>Exclude variants with these FILTER values:</B><BR>\n");
 char cartVar[1024];
 safef(cartVar, sizeof(cartVar), "%s."VCF_EXCLUDE_FILTER_VAR, name);
 jsMakeCheckboxGroupSetClearButton(cartVar, TRUE);
 puts("&nbsp;");
 jsMakeCheckboxGroupSetClearButton(cartVar, FALSE);
 char *values[filterCount];
 char *labels[filterCount];
 int i;
 struct vcfInfoDef *filt;
 for (i=0, filt=vcff->filterDefs;  filt != NULL;  i++, filt = filt->next)
     {
     values[i] = filt->key;
     struct dyString *dy = dyStringNew(0);
     dyStringAppend(dy, filt->key);
     if (isNotEmpty(filt->description))