File Changes for cricket

v260_base to v261_preview (2011-12-06 to 2011-12-13) v261

• src/hg/encode/DAFs/3.0/hg19/wgEncodeGencode.daf
  • lines changed 1, context: html, text, full: html, text
    Making a dummy daf for Gencode
• src/hg/encode/DAFs/3.0/hg19/wgEncodeGencodeV7.daf
  • lines changed 0, context: html, text, full: html, text
    Making a dummy daf for Gencode
• src/hg/encode/DAFs/3.0/hg19/wgEncodeHaibRnaSeq.daf
  • lines changed 4, context: html, text, full: html, text
    Adjusting the DAF to have less expVars
• src/hg/encode/DAFs/3.0/hg19/wgEncodeRikenCage.daf
  • lines changed 23, context: html, text, full: html, text
    Upgrading the DAF to have the elements in one daf and the required to be all no
• src/hg/encode/encodeValidate/config/fields.ra
  • lines changed 6, context: html, text, full: html, text
    Changing int to a string, I am not sure why this isn't in the cv
• src/hg/htdocs/ENCODE/pubs.html
  • lines changed 32, context: html, text, full: html, text
    Adding some pubs according to ticket 6090
• src/hg/makeDb/doc/encodeDccHg19/gencodeV9.txt
  • lines changed 27, context: html, text, full: html, text
    Adding some notes about what i am doing
  • lines changed 26, context: html, text, full: html, text
    Adding a GencodeV10 structure, cleaning up v9 notes and submission date
• src/hg/makeDb/doc/encodeDccHg19/wgEncodeGencodeV9.release1.notes
  • lines changed 0, context: html, text, full: html, text
    The encodeMkChangeNotes fails on Gencode
• src/hg/makeDb/doc/encodeDccHg19/wgEncodeRikenCage.release2.notes
  • lines changed 7, context: html, text, full: html, text
    Adding the V2 data for the broken TssHmm files
• src/hg/makeDb/trackDb/cv/alpha/cv.ra
  • lines changed 43, context: html, text, full: html, text
    removing rnaTreatment and run
  • lines changed 28, context: html, text, full: html, text
    Removing tags with jeff according to code review
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/makefile
  • lines changed 1, context: html, text, full: html, text
    Adding a GencodeV10 structure, cleaning up v9 notes and submission date
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGencodeV10.ra
  • lines changed 278, context: html, text, full: html, text
    Adding a GencodeV10 structure, cleaning up v9 notes and submission date
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGencodeV9.ra
  • lines changed 42, context: html, text, full: html, text
    Adding a new object and the correct md5sums
  • lines changed 17, context: html, text, full: html, text
    Adding a GencodeV10 structure, cleaning up v9 notes and submission date
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRikenCage.ra
  • lines changed 145, context: html, text, full: html, text
    Adding the V2 data for the broken TssHmm files
  • lines changed 19, context: html, text, full: html, text
    Adding the accession and md5sums
• src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra
  • lines changed 1, context: html, text, full: html, text
    Changing the release structure for Haib RNA Seq
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.html
  • lines changed 1, context: html, text, full: html, text
    Changing the html to not say pooled, dropping the extraFields
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.new.html
  • lines changed 4, context: html, text, full: html, text
    Changing the html to not say pooled, dropping the extraFields
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.new.ra
  • lines changed 6, context: html, text, full: html, text
    Changing the html to not say pooled, dropping the extraFields
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibRnaSeq.html
  • lines changed 123, context: html, text, full: html, text
    Changing the release structure for Haib RNA Seq
  • lines changed 25, context: html, text, full: html, text
    Changing details as requested in ticket 1710
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibRnaSeq.new.html
  • lines changed 94, context: html, text, full: html, text
    Changing the release structure for Haib RNA Seq
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibRnaSeq.new.ra
  • lines changed 1212, context: html, text, full: html, text
    Changing the release structure for Haib RNA Seq
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibRnaSeq.ra
  • lines changed 10, context: html, text, full: html, text
    Changing the release structure for Haib RNA Seq
  • lines changed 188, context: html, text, full: html, text
    Changing details as requested in ticket 1710
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibRnaSeq.release2.html
  • lines changed 94, context: html, text, full: html, text
    Changing the release structure for Haib RNA Seq
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibRnaSeq.release2.ra
  • lines changed 1212, context: html, text, full: html, text
    Changing the release structure for Haib RNA Seq
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.release2.html
  • lines changed 7, context: html, text, full: html, text
    Bringing some of Flo's words back into this html description of shRNA