File Changes for hiram

v260_base to v261_preview (2011-12-06 to 2011-12-13) v261

• src/hg/makeDb/doc/gorGor3.txt
  • lines changed 816, context: html, text, full: html, text
    annotation done, phastCons and phyloP done for 11-way multiz
  • lines changed 80, context: html, text, full: html, text
    download data for 11-way business is done
  • lines changed 60, context: html, text, full: html, text
    hgPal downloads constructed for 11-way
• src/hg/makeDb/genbank/etc/genbank.conf
  • lines changed 2, context: html, text, full: html, text
    set the upstreamGeneTbl and upstreamMaf for gorGor3
• src/hg/makeDb/trackDb/gorilla/gorGor3/cons11way.html
  • lines changed 406, context: html, text, full: html, text
    initial text derived from xenTro3
• src/hg/makeDb/trackDb/gorilla/gorGor3/trackDb.ra
  • lines changed 104, context: html, text, full: html, text
    adding cons11way track
• src/hg/utils/phyloTrees/57way.nh
  • lines changed 9, context: html, text, full: html, text
    rearrange the fish a bit, and coelacanth, alligator, crocodile
  • lines changed 5, context: html, text, full: html, text
    now with new distances for the primates from the 11-way gorGor3 calculations
• src/hg/utils/phyloTrees/speciesList.sh
  • lines changed 21, context: html, text, full: html, text
    initial contents seem to work
• src/product/scripts/updateHtml.sh
  • lines changed 8, context: html, text, full: html, text
    allow Encode html hierarchy to be pulled