File Changes for vsmalladi

v260_base to v261_preview (2011-12-06 to 2011-12-13) v261

• python/ucsc_virtualenv.py
  • lines changed 2115, context: html, text, full: html, text
    Added script and readme on how to create virtual environments for ucsc(ENCODE) developers and testers.
• python/virtual.txt
  • lines changed 46, context: html, text, full: html, text
    Added script and readme on how to create virtual environments for ucsc(ENCODE) developers and testers.
• src/hg/encode/DAFs/3.0/hg19/wgEncodeCaltechRnaSeq.daf
  • lines changed 2, context: html, text, full: html, text
    Removed sparse fastq validation inorder to validate the entire fastq file.
• src/hg/makeDb/trackDb/cv/alpha/cv.ra
  • lines changed 1, context: html, text, full: html, text
    Fixes made from recommendation in Redmine #4577 1. Changed View label and long labels from "Wavelet Smoothed Signal" -> "Wavelet-smoothed Signal" 2. Added Year for Genome Res. article 3. Update Long labels to have -Phase for "Percentage-normalized Signal"
  • lines changed 10, context: html, text, full: html, text
    Updated track defaults to be 2 view only: Percentage-normalized Signl and Wavelet-smoothed Signal. Updated description of phases in cv.ra and Wavelet-smoothed signal in cv.ra and track description. Based on Lab and Kate's recommendations. Redmine #4577.
• src/hg/makeDb/trackDb/cv/public/cv.ra
  • lines changed 82, context: html, text, full: html, text
    Removed stanza's with PROVISIONAL tags. Also update registered trademakr symbol to be (R).
  • lines changed 14, context: html, text, full: html, text
    Added back a missing typeOfTerm (bioRep).
  • lines changed 74, context: html, text, full: html, text
    Moved over approved changes from beta/cv.ra. Redmine #6202.
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwRepliSeq.html
  • lines changed 3, context: html, text, full: html, text
    Fixes made from recommendation in Redmine #4577 1. Changed View label and long labels from "Wavelet Smoothed Signal" -> "Wavelet-smoothed Signal" 2. Added Year for Genome Res. article 3. Update Long labels to have -Phase for "Percentage-normalized Signal"
  • lines changed 2, context: html, text, full: html, text
    Updated track defaults to be 2 view only: Percentage-normalized Signl and Wavelet-smoothed Signal. Updated description of phases in cv.ra and Wavelet-smoothed signal in cv.ra and track description. Based on Lab and Kate's recommendations. Redmine #4577.
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwRepliSeq.ra
  • lines changed 118, context: html, text, full: html, text
    Fixes made from recommendation in Redmine #4577 1. Changed View label and long labels from "Wavelet Smoothed Signal" -> "Wavelet-smoothed Signal" 2. Added Year for Genome Res. article 3. Update Long labels to have -Phase for "Percentage-normalized Signal"
  • lines changed 18, context: html, text, full: html, text
    Updated track defaults to be 2 view only: Percentage-normalized Signl and Wavelet-smoothed Signal. Updated description of phases in cv.ra and Wavelet-smoothed signal in cv.ra and track description. Based on Lab and Kate's recommendations. Redmine #4577.
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodePsuTfbs.ra
  • lines changed 728, context: html, text, full: html, text
    Did some metaDb cleanup and added 6 inputs. Redmine #110.
  • lines changed 211, context: html, text, full: html, text
    Updated Filenames to be standard format. Redmine #110.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuTfbs.ra
  • lines changed 55, context: html, text, full: html, text
    Did some metaDb cleanup and added 6 inputs. Redmine #110.