f554d6b1a0d1b83c3f05e3adc20affa21ca71f8f angie Tue Dec 13 21:24:51 2011 -0800 MLQ #6291: per Greg's request, updating pgSnp codon display tables to use instead of setting properties like borderwidth etc. diff --git src/hg/lib/pgSnp.c src/hg/lib/pgSnp.c index 6788be2..994aa27 100644 --- src/hg/lib/pgSnp.c +++ src/hg/lib/pgSnp.c @@ -563,31 +563,32 @@ return -1.3; if (sameString(aa, "V")) return 4.2; return 0; } void aaProperties (char *aa1, char *aa2) /* print amino acid properties for these amino acids */ { char *pol1 = aaPolarity(aa1); char *pol2 = aaPolarity(aa2); char *acid1 = aaAcidity(aa1); char *acid2 = aaAcidity(aa2); float hyd1 = aaHydropathy(aa1); float hyd2 = aaHydropathy(aa2); -printf("
\n", aa1, aa2); +printf("
Amino acid properties
 %s%s
" + "\n", aa1, aa2); /* take out highlights, not sure what is significant change for hydropathy */ //if (differentString(pol1, pol2)) //printf("\n", pol1, pol2); //else printf("\n", pol1, pol2); //if (differentString(acid1, acid2) && //(!startsWith("basic", acid1) || !startsWith("basic", acid2)) ) //printf("\n", acid1, acid2); //else printf("\n", acid1, acid2); //if ((hyd1 < 0 && hyd2 > 0) || (hyd1 > 0 && hyd2 < 0)) //printf("
Amino acid properties
 %s%s
polarity%s%s
polarity%s%s
acidity%s%s
acidity%s%s
hydropathy%1.1f%1.1f
\n", hyd1, hyd2); //else printf("hydropathy%1.1f%1.1f\n", hyd1, hyd2); printf("
");