f3b76f9ac68bc77dfbc2639486d9902d8d6cf4aa
max
  Tue Dec 13 14:00:55 2011 -0800
incorporated larrym's changes to source code style
diff --git src/hg/hgc/t2g.c src/hg/hgc/t2g.c
index aca4595..791d9ee 100644
--- src/hg/hgc/t2g.c
+++ src/hg/hgc/t2g.c
@@ -80,32 +80,36 @@
 void printSeqHeaders(bool showDesc, bool isClickedSection) 
 {
     printf("<TABLE style=\"background-color: #%s\" WIDTH=\"100%%\" CELLPADDING=\"2\">\n", HG_COL_BORDER);
     printf("<TR style=\"background-color: #%s; color: #FFFFFF\">\n", HG_COL_TABLE_LABEL);
     if (showDesc)
         puts("  <TH style=\"width: 10%\">Article file</TH>\n");
     puts("  <TH style=\"width: 70%\">Sequence (in bold) with flanking text</TH>\n");
     if (t2gDebug)
         puts("  <TH style=\"width: 30%\">Identifiers</TH>\n");
 
     if (!isClickedSection && !t2gDebug)
         puts("  <TH style=\"width: 20%\">Matches</TH>\n");
     puts("</TR>\n");
 }
 
-bool printSeqSection(char* docId, char* title, bool showDesc, struct sqlConnection* conn, struct hash* filterIdHash, bool isClickedSection, bool fasta)
+bool printSeqSection(char* docId, char* title, bool showDesc, struct sqlConnection* conn, struct hash* clickedSeqs, bool isClickedSection, bool fasta)
 /* print a table of sequences, show only sequences with IDs in hash,
+ * There are two sections, respective sequences are shown depending on isClickedSection and clickedSeqs 
+ *   - seqs that were clicked on (isClickedSection=True) -> show only seqs in clickedSeqs
+ *   - other seqs (isClickedSection=False) -> show all other seqs
+ * 
  * */
 {
     // get data from mysql
     char query[4096];
     safef(query, sizeof(query), "SELECT fileDesc, snippet, locations, articleId,fileId, seqId, sequence FROM %s WHERE articleId='%s';", sequenceTable, docId);
     if (t2gDebug)
         puts(query);
     struct sqlResult *sr = sqlGetResult(conn, query);
 
     // construct title for section
     char fullTitle[5000];
     safef(fullTitle, sizeof(fullTitle), 
     "%s&nbsp;<A HREF=\"../cgi-bin/hgc?%s&o=%s&t=%s&g=%s&i=%s&fasta=%d\"><SMALL>(switch fasta format)</SMALL></A>", 
     title, cartSidUrlString(cart), cgiString("o"), cgiString("t"), cgiString("g"), cgiString("i"), 
     !fasta);
@@ -121,31 +125,31 @@
     {
         char* fileDesc = row[0];
         char* snippet  = row[1];
         char* locList  = row[2];
         char* artId    = row[3];
         char* fileId   = row[4];
         char* seqId    = row[5];
         char* seq      = row[6];
 
         // annotation (=sequence) ID is a 64 bit int with 10 digits for 
         // article, 3 digits for file, 5 for annotation
         char annotId[100];
         safef(annotId, 100, "%010d%03d%05d", atoi(artId), atoi(fileId), atoi(seqId));
 
         // only display this sequence if we're in the right section
-        if (filterIdHash!=NULL && ((hashLookup(filterIdHash, annotId)==0) ^ !isClickedSection)) {
+        if (clickedSeqs!=NULL && ((hashLookup(clickedSeqs, annotId)!=0) != isClickedSection)) {
             foundSkippedRows = TRUE;
             continue;
         }
 
         if (fasta)
         {
             printf("<TT>>%s<BR>%s<BR></TT>", annotId, seq);
         }
         else
         {
             printf("<TR style=\"background-color: #%s\">\n", HG_COL_LOCAL_TABLE);
             if (showDesc)
                 printf("<TD style=\"word-break: normal\">%s\n", fileDesc);
             //printf("<TD><I>%s</I></TD>\n", snippet); 
             printf("<TD style=\"word-break: normal\"><I>%s</I></TD>\n", snippet);