30be20bb1ecf5507270dc810a825ceedc1edce21
rhead
  Mon Dec 19 15:15:31 2011 -0800
Addendum to commit 1dd2ddbe9355 that angie made to include BAM and VCF in the list of formats that need to be embedded in a track line.  The wording is in two places.  I added a comma to one spot and the file formats in the other spot.
diff --git src/hg/hgCustom/hgCustom.c src/hg/hgCustom/hgCustom.c
index ec7282f..42d7b04 100644
--- src/hg/hgCustom/hgCustom.c
+++ src/hg/hgCustom/hgCustom.c
@@ -102,57 +102,57 @@
   " <A TARGET=_BLANK HREF='../goldenPath/help/bigBed.html'>bigBed</A>,\n"
   " <A TARGET=_BLANK HREF='../goldenPath/help/bedgraph.html'>bedGraph</A>,\n"
   " <A TARGET=_BLANK HREF='../goldenPath/help/customTrack.html#GFF'>GFF</A>,\n"
   " <A TARGET=_BLANK HREF='../goldenPath/help/customTrack.html#GTF'>GTF</A>,\n"
   " <A TARGET=_BLANK HREF='../goldenPath/help/wiggle.html'>WIG</A>\n"
   " <A TARGET=_BLANK HREF='../goldenPath/help/bigWig.html'>bigWig</A>,\n"
   " <A TARGET=_BLANK HREF='../FAQ/FAQformat.html#format1.7'>BED detail</A>,\n"
   " <A TARGET=_BLANK HREF='../FAQ/FAQformat.html#format10'>Personal Genome SNP</A>,\n"
   " or <A TARGET=_BLANK HREF='../goldenPath/help/customTrack.html#PSL'>PSL</A>\n"
   " formats. To configure the display, set\n"
   " <A TARGET=_BLANK HREF='../goldenPath/help/customTrack.html#TRACK'>track</A>\n"
   " and"
   " <A TARGET=_BLANK HREF='../goldenPath/help/customTrack.html#BROWSER'>browser</A>\n"
   " line attributes as described in the \n"
   " <A TARGET=_BLANK HREF='../goldenPath/help/customTrack.html'>User's Guide</A>.\n"
-  " URLs for data in the bigBed, bigWig BAM and VCF formats must be embedded in a track\n"
+  " URLs for data in the bigBed, bigWig, BAM and VCF formats must be embedded in a track\n"
   " line in the box below.\n"
   );
   }
 else
   {
   puts(" Data must be formatted in\n"
   " <A TARGET=_BLANK HREF='../goldenPath/help/customTrack.html#BED'>BED</A>,\n"
   " <A TARGET=_BLANK HREF='../goldenPath/help/bigBed.html'>bigBed</A>,\n"
   " <A TARGET=_BLANK HREF='../goldenPath/help/bedgraph.html'>bedGraph</A>,\n"
   " <A TARGET=_BLANK HREF='../goldenPath/help/customTrack.html#GFF'>GFF</A>,\n"
   " <A TARGET=_BLANK HREF='../goldenPath/help/customTrack.html#GTF'>GTF</A>,\n"
   " <A TARGET=_BLANK HREF='../goldenPath/help/wiggle.html'>WIG</A>,\n"
   " <A TARGET=_BLANK HREF='../goldenPath/help/bigWig.html'>bigWig</A>,\n"
   " <A TARGET=_BLANK HREF='../goldenPath/help/maf.html'>MAF</A>,\n"
   " <A TARGET=_BLANK HREF='../goldenPath/help/bam.html'>BAM</A>,\n"
   " <A TARGET=_BLANK HREF='../FAQ/FAQformat.html#format1.7'>BED detail</A>,\n"
   " <A TARGET=_BLANK HREF='../FAQ/FAQformat.html#format10'>Personal Genome SNP,</A>\n"
   " <A TARGET=_BLANK HREF='../goldenPath/help/vcf.html'>VCF</A>,\n"
   " or <A TARGET=_BLANK HREF='../goldenPath/help/customTrack.html#PSL'>PSL</A>\n"
   " formats. To configure the display, set\n"
   " <A TARGET=_BLANK HREF='../goldenPath/help/customTrack.html#TRACK'>track</A>\n"
   " and"
   " <A TARGET=_BLANK HREF='../goldenPath/help/customTrack.html#BROWSER'>browser</A>\n"
   " line attributes as described in the \n"
   " <A TARGET=_BLANK HREF='../goldenPath/help/customTrack.html'>User's Guide</A>.\n"
-  " URLs for data in the bigBed and bigWig formats must be embedded in a track\n"
+  " URLs for data in the bigBed, bigWig, BAM and VCF formats must be embedded in a track\n"
   " line in the box below.\n"
   " Publicly available custom tracks are listed\n"
   " <A HREF='../goldenPath/customTracks/custTracks.html'>here</A>.\n"
   " Examples are\n"
   " <A TARGET=_BLANK HREF='../goldenPath/help/customTrack.html#EXAMPLE1'>here</A>.\n"
   );
   }
 }
 
 void addCustomForm(struct customTrack *ct, char *err)
 /* display UI for adding custom tracks by URL or pasting data */
 {
 char *dataUrl = NULL;
 char buf[1024];