Commits for vsmalladi

v261_preview to v261_preview2 (2011-12-13 to 2011-12-20) v261

• First pass at creating a .as file that is structured for the Junctions data from caltech.
  • src/hg/lib/encode/bedRnaJunctions.as - lines changed 13, context: html, text, full: html, text
• Moved changes that are good, and omitted any tag's with PROVISIONAL in the description. Changes are part of the normal cv Maven process: Redmine #6306 In addition changes move over Human and Mouse validation tags that link to the following tickets: Redmine #1012 #6055
  • src/hg/makeDb/trackDb/cv/public/cv.ra - lines changed 410, context: html, text, full: html, text
• Updated schema to use -1 if no IDR is run.
  • src/hg/lib/encode/bedRnaJunctions.as - lines changed 1, context: html, text, full: html, text
• Renamed Daf file to true composite name as Dgf instead of Dfg.
  • src/hg/encode/DAFs/3.0/mm9/wgEncodeUwDfg.daf - lines changed 76, context: html, text, full: html, text
  • src/hg/encode/DAFs/3.0/mm9/wgEncodeUwDgf.daf - lines changed 76, context: html, text, full: html, text
• Added 2 new ages.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 12, context: html, text, full: html, text
• Added 3 new Mouse cell/Tissue registrations.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 54, context: html, text, full: html, text
• Added Inputs for track. Redmine #111.
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodePsuHistone.ra - lines changed 1009, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuHistone.ra - lines changed 58, context: html, text, full: html, text
• Updated input meta-data. Redmine #110.
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodePsuTfbs.ra - lines changed 162, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuTfbs.ra - lines changed 29, context: html, text, full: html, text
• Modified order of Inputs appearing in the matrix. Redmine #110, #111.
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuHistone.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuTfbs.ra - lines changed 1, context: html, text, full: html, text
• Updated to version 1.2 to have require replicate column.
  • src/hg/encode/DAFs/3.0/mm9/wgEncodeUwDgf.daf - lines changed 9, context: html, text, full: html, text
• Removed extraneous alignment file for track. Redmine #110.
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodePsuTfbs.ra - lines changed 26, context: html, text, full: html, text
• Merge branch 'Development-Mouse'