5976dc3dee86013c695d4ecfc69f44e3ec6b002d
cline
  Tue Jan 17 16:17:50 2012 -0800
Updated the HGNC object so that it contains all the fields from the HGNC standard download tables
diff --git src/hg/lib/hgnc.as src/hg/lib/hgnc.as
index b3b2b8a..c338e10 100644
--- src/hg/lib/hgnc.as
+++ src/hg/lib/hgnc.as
@@ -1,29 +1,45 @@
 table hgnc
 "A cross-reference table between HUGO Gene Nomenclature Committee (HGNC) IDs and other database IDs."
 	(
 	string hgncId;	"HGNC ID"
 	string symbol;	"Approved Symbol"
 	string name;	"Approved Name"
 	string status;	"Status"
 	string locusType;	"Locus Type"
+	string locusGroup;      "Locus Group"
 	string prvSymbols;	"Previous Symbols"
-	string prvNames;	"Previous Names"
-	string aliases;		"Aliases"
+	lstring prvNames;	"Previous Names"
+	string synonyms;	"Synonyms"
+	lstring nameSyns;        "Name synonyms"
 	string chrom;		"Reference sequence chromosome or scaffold"
 	string dateApprv;	"Date Approved"
 	string dateMod;		"Date Modified"
-	string dateChange;	"Date Name Changed"
+	string dateSymChange;	"Date Symbol Changed"
+        string dateNmChange;    "Date Name Changed"
 	string accession;	"Accession Numbers"
 	string enzymeIds;	"Enzyme IDs"
 	string entrezId;	"Entrez Gene ID"
-	string MgdId;		"MGD ID"
-	string miscIds;		"Misc IDs"
+	string ensId;           "Ensembl Gene ID"
+	string mgdId;		"MGD ID"
+        lstring miscDbs;         "Misc Database Links"
+	string miscIds;		"Misc Database IDs"
 	string pubMed;		"Pubmed IDs"
 	string refSeqIds;	"RefSeq IDs"
-	string geneFamily;	"Gene Family Name"
-	string gdbId;		"GDB ID (mapped data)"
+	string geneFamilyNm;	"Gene Family Name"
+	string geneFamilyDesc;  "Gene Family Description"
+        string recType;         "Record Type"
+        string primaryId;       "Primary ID"
+        string secondaryId;     "Secondary ID"
+        string ccdsId;          "CCDS ID"
+        string vegaId;          "Vega ID"
+        lstring locusDbs;        "Locus-Specific Databases"
+        string gdbMapped;       "GDB ID (mapped data)"
 	string entrezMapped;	"Entrez Gene ID (mapped data)"
-	string omim;		"OMIM ID (mapped data)"
+	string omimMapped;	"OMIM ID (mapped data)"
 	string refSeqMapped;	"RefSeq (mapped data)"
-	string uniProt;		"UniProt ID (mapped data)"
+	string uniProtMapped;	"UniProt ID (mapped data)"
+	string ensMapped;       "ENSEMLB ID (mapped data)"
+        string ucscMapped;      "UCSC ID (mapped data)"
+        string mgiMapped;       "MGD ID (mapped data)"
+        string rgdMapped;       "Rat genome database ID (mapped data)"
 	)