Commits for hiram

v262_preview2 to v262_base (2012-01-17 to 2012-01-24) v262

• with distances very similar to the 46way
  • src/hg/utils/phyloTrees/60way.nh - lines changed 25, context: html, text, full: html, text
• adding new species, plus new nomenclature from NCBI taxonomy viewer
  • src/hg/utils/phyloTrees/placentals.txt - lines changed 15, context: html, text, full: html, text
  • src/hg/utils/phyloTrees/primates.txt - lines changed 2, context: html, text, full: html, text
  • src/hg/utils/phyloTrees/vertebrates.txt - lines changed 51, context: html, text, full: html, text
• done with lastz for Atlantic Cod and Coelacanth
  • src/hg/makeDb/doc/fr3.txt - lines changed 116, context: html, text, full: html, text
• avoid old descriptions being pushed on top of newer descriptions
  • src/hg/makeDb/trackDb/loadTracks - lines changed 1, context: html, text, full: html, text
• MKDIR for encode directory to get it to exist, and the rsync in loadTracks did not actually work
  • src/hg/makeDb/trackDb/loadTracks - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/makefile - lines changed 4, context: html, text, full: html, text
• missing ;
  • src/hg/makeDb/trackDb/loadTracks - lines changed 1, context: html, text, full: html, text
• clarify the operations of hgTrackDb operations
  • src/product/README.trackDb - lines changed 13, context: html, text, full: html, text
• expand usage message to include meaning of all arguments
  • src/hg/makeDb/hgTrackDb/hgTrackDb.c - lines changed 18, context: html, text, full: html, text
• adding compile target and a little clean up
  • src/hg/makeDb/hgTrackDb/makefile - lines changed 9, context: html, text, full: html, text