90552ab734c6136f06aa67d74108a8c5047c04d9 luvina Mon Jan 23 09:48:33 2012 -0800 fixed spelling for Australian diff --git src/hg/htdocs/indexNews.html src/hg/htdocs/indexNews.html index f7a7fc0..e8058a2 100644 --- src/hg/htdocs/indexNews.html +++ src/hg/htdocs/indexNews.html @@ -1,160 +1,160 @@ <!--News Section-----------------------------------------------> <TABLE WIDTH="100%" BGCOLOR="#888888" BORDER="0" CELLSPACING="0" CELLPADDING="1"> <TR><TD> <TABLE BGCOLOR="#fffee8" WIDTH="100%" BORDER="0" CELLSPACING="0" CELLPADDING="0"> <TR><TD> <TABLE BGCOLOR="#D9E4F8" BACKGROUND="images/hr.gif" WIDTH="100%" BORDER=0> <TR><TD> <!--cheap trick to get background on row to be continuous--> <TABLE CELLPADDING=0 CELLSPACING=0 WIDTH="100%"> <TR><TD ALIGN="left"> <font size="4"><a name="TOC"></a><b> News</b></font><a href="http://www.twitter.com/GenomeBrowser" target="_blank"><img src="http://twitter-badges.s3.amazonaws.com/t_small-a.png" alt="Follow GenomeBrowser on Twitter" style="vertical-align:text-bottom; margin-left: 15px;"></a></TD> <TD ALIGN="right"><A HREF="goldenPath/newsarch.html"><IMG SRC="images/news.jpg" ALT="" ALIGN="right" BORDER=0></A> </TD></TR></TABLE> </TD></TR></TABLE> <TABLE BGCOLOR="#fffee8" WIDTH="100%" CELLPADDING=0> <TR><TH HEIGHT=3></TH></TR> <TR><TD WIDTH=10></TD> <TD> <P> To receive announcements of new genome assembly releases, new software features, updates and training seminars by email, subscribe to the <A HREF="https://lists.soe.ucsc.edu/mailman/listinfo/genome-announce" TARGET=_blank>genome-announce</A> mailing list.</P> <!-- start news --> <!-- Wallaby Assembly release --> <FONT FACE="courier" SIZE="3"><B>23 January 2012 - Wallaby Browser Available</B></FONT> <P> We have released a Genome Browser for the September 2009 genome assembly of the Tammar Wallaby, <em>Macropus eugenii</em> (TWGS version Meug_1.1, UCSC version macEug2). This assembly, which has been sequenced to 2X coverage, was produced by the Tammar Wallaby Genome Sequencing Consortium, a collaboration between the Baylor College of Medicine <a href="http://www.hgsc.bcm.tmc.edu/project-species-m-Wallaby.hgsc" target="_blank"> Human Genome Sequencing Center</a> and the - <a href="http://www.agrf.org.au/default.aspx" target="_blank">Austrailian Genome Research Facility</a>. + <a href="http://www.agrf.org.au/default.aspx" target="_blank">Australian Genome Research Facility</a>. <P> Bulk downloads of the sequence and annotation data are available via the Genome Browser <A HREF="ftp://hgdownload.cse.ucsc.edu/goldenPath/macEug2/" target="_blank">FTP server</A> or the <A HREF="http://hgdownload.cse.ucsc.edu/downloads.html#wallaby" target="_blank">Downloads</A> page. These data have <A HREF="goldenPath/credits.html#wallaby_use" target="_blank">specific conditions for use</A>. <P> We'd like to thank the Tammar Wallaby Genome Sequencing Consortium for providing this assembly. The wallaby Genome Browser and annotation tracks were produced by Chin Li, Luvina Guruvadoo, and Donna Karolchik. See the <A HREF="goldenPath/credits.html#wallaby_credits" target="_blank">Credits</A> page for a detailed list of the organizations and individuals who contributed to this release. <P> <FONT FACE="courier" SIZE="3"><B>3 January 2012 - Roadmap Epigenomics Now Available through Data Hub at Washington University</B></FONT> <P> We are pleased to announce the release of the Roadmap Epigenomics data on the UCSC Genome Browser through our Data Hub function. The Roadmap Epigenomics Project is part of The NIH Common Fund's <a href="https://commonfund.nih.gov/epigenomics/" target="_blank">Epigenomics Program</a>. It was launched with the goal of producing a public resource of human epigenomic data to catalyze basic biology and disease-oriented research. The Consortium leverages experimental pipelines built around next-generation sequencing technologies to map DNA methylation, histone modifications, chromatin accessibility and small RNA transcripts in stem cells and primary ex vivo tissues selected to represent the normal counterparts of tissues and organ systems frequently involved in human disease. The Consortium expects to deliver a collection of normal epigenomes that will provide a framework or reference for comparison and integration within a broad array of future studies. <P> All data were produced and processed by the <a href="http://www.roadmapepigenomics.org/" target="_blank"> Roadmap Epigenomics Mapping Consortium</a>, and will be periodically updated. Genome Browser tracks were constructed and hosted by <a href="http://vizhub.wustl.edu/" target="_blank">VizHub</a> at Washington University in St. Louis. Tracks are available at UCSC Genome Browser via the Data Hub function, or follow this <a href="http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&hubUrl= http://vizhub.wustl.edu/VizHub/RoadmapRelease4.txt" target="_blank">link</a>. The Roadmap Epigenomics Mapping Consortium is responsible for the quality of the data. <P> <FONT FACE="courier" SIZE="3"><B>19 December 2011 - Variant Call Format (VCF) Now Supported in Genome Browser</B></FONT> <P> We are pleased to announce that the UCSC Genome Browser now supports Variant Call Format (VCF). VCF is a flexible and extendable line-oriented text format developed by the 1000 Genomes Project for releases of single nucleotide variants, indels, copy number variants and structural variants discovered by the project. Similar to bigBed, bigWig and BAM, the Browser transfers only the portions of VCF files necessary to display viewed regions, making VCF a fast and attractive option for large data sets. VCF files will need to be compressed and indexed using the tabix package available from <a href="http://samtools.sourceforge.net/" target="_blank">SAMtools</a>. This new format is available for use in custom tracks and data hubs. For more information about VCF and tabix, please see our <a href="goldenPath/help/vcf.html" target="_blank">VCF Track Format help page</a>.</P> <P> <HR> <!-- start archives --> <!-- bosTau6 Assembly Release --> <FONT FACE="courier" SIZE="3"><B>7 November 2011 - UMD Cow Assembly Now Available in Genome Browser:</B></FONT> In response to the many requests from the bovine research community, we now offer the University of Maryland (UMD) <em>Bos taurus</em> assembly in the Genome Browser, in addition to the assemblies produced by the Baylor College of Medicine Human Genome Sequencing Center. <A HREF="goldenPath/newsarch.html#071111">Read more</A>. </P> <!-- sacCer3 Assembly Release --> <FONT FACE="courier" SIZE="3"><B>10 October 2011 - Updated Yeast Browser Released: </B></FONT> We are happy to announce the release of an updated browser for the <em>Saccharomyces cerevisiae</em> yeast genome. <A HREF="goldenPath/newsarch.html#101011">Read more</A>. </P> <!-- New javascript features --> <P> <FONT FACE="courier" SIZE="3"><B>8 September 2011 - New Navigation and Display Features: </B></FONT> We've added several new features to the Genome Browser that make it easier to quickly configure and navigate around in the browser's annotation tracks window. <A HREF="goldenPath/newsarch.html#090811">Read more</A>. <!-- data hubs release --> <P> <FONT FACE="courier" SIZE="3"><B>18 August 2011 - New Feature: Track Data Hubs: </B></FONT> We are pleased to announce a new feature in the UCSC Genome Browser: Track Data Hubs. Track hubs are web-accessible directories of genomic data that can be viewed on the UCSC Genome Browser alongside native annotation tracks. <A HREF="goldenPath/newsarch.html#081811">Read more</A>. </P> ==> <a href="goldenPath/newsarch.html">News Archives</a> </TD><TD WIDTH=15> </TD></TR></TABLE> <BR></TD></TR></TABLE> </TD></TR></TABLE>