File Changes for hiram

v261_base to v262_preview (2012-01-03 to 2012-01-10) v262

• src/hg/hgc/hgc.c
  • lines changed 2, context: html, text, full: html, text
    eliminate duplicate print out of html description page for bedDetail custom tracks
• src/hg/makeDb/doc/canFam3.txt
  • lines changed 375, context: html, text, full: html, text
    initial contents, running masking steps
  • lines changed 85, context: html, text, full: html, text
    masking completed
• src/hg/makeDb/doc/gadMor1.txt
  • lines changed 121, context: html, text, full: html, text
    done through initial genome build
  • lines changed 240, context: html, text, full: html, text
    done with masking
  • lines changed 2, context: html, text, full: html, text
    last featureBits run for the gap measurements
• src/hg/makeDb/doc/galGal4.txt
  • lines changed 20, context: html, text, full: html, text
    done with the sequence download
  • lines changed 445, context: html, text, full: html, text
    running repeatMasker, simpleRepeats and windowMasker
  • lines changed 47, context: html, text, full: html, text
    completed masking
• src/hg/makeDb/doc/panTro4.txt
  • lines changed 474, context: html, text, full: html, text
    initial browser build and starting masking procedures
  • lines changed 85, context: html, text, full: html, text
    done with masking
• src/hg/makeDb/doc/rheMac3.txt
  • lines changed 177, context: html, text, full: html, text
    done through initial genome build
  • lines changed 193, context: html, text, full: html, text
    masking done
  • lines changed 3, context: html, text, full: html, text
    correct done dates
• src/hg/makeDb/doc/saiBol1.txt
  • lines changed 341, context: html, text, full: html, text
    initial browser build and starting masking procedures
  • lines changed 132, context: html, text, full: html, text
    done with masking
• src/hg/makeDb/genbank/etc/genbank.conf
  • lines changed 27, context: html, text, full: html, text
    setting upstreamGeneTbl for many older genomes
• src/hg/makeDb/hgLoadBed/hgLoadBed.c
  • lines changed 2, context: html, text, full: html, text
    improve the error messages
  • lines changed 1, context: html, text, full: html, text
    fixup error in file name information display
• src/hg/makeDb/trackDb/chicken/galGal4/description.html
  • lines changed 129, context: html, text, full: html, text
    initial contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/chicken/galGal4/gap.html
  • lines changed 64, context: html, text, full: html, text
    initial contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/chicken/galGal4/gold.html
  • lines changed 23, context: html, text, full: html, text
    initial contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/chicken/galGal4/trackDb.ra
  • lines changed 8, context: html, text, full: html, text
    initial contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/chimp/panTro4/description.html
  • lines changed 129, context: html, text, full: html, text
    initial source from makeGenomeDb.pl
• src/hg/makeDb/trackDb/chimp/panTro4/gap.html
  • lines changed 64, context: html, text, full: html, text
    initial source from makeGenomeDb.pl
• src/hg/makeDb/trackDb/chimp/panTro4/gold.html
  • lines changed 23, context: html, text, full: html, text
    initial source from makeGenomeDb.pl
• src/hg/makeDb/trackDb/chimp/panTro4/trackDb.ra
  • lines changed 8, context: html, text, full: html, text
    initial source from makeGenomeDb.pl
• src/hg/makeDb/trackDb/makefile
  • lines changed 1, context: html, text, full: html, text
    adding galGal4 to the build
  • lines changed 1, context: html, text, full: html, text
    adding panTro4 to the build
• src/hg/utils/automation/doSimpleRepeat.pl
  • lines changed 1, context: html, text, full: html, text
    the split command needs to be 3 digit numeric expansion to avoid .gz file name
• src/hg/utils/phyloTrees/58way.nh
  • lines changed 24, context: html, text, full: html, text
    adding Atlantic Cod gadMor1