75c31c42cd1715b01956b9afb8cbc1bc5726ba04
larrym
  Mon Jan 9 15:58:32 2012 -0800
add synonym for stop-loss, which appears in snp135 data (see redmine #6419)
diff --git src/hg/lib/snp125Ui.c src/hg/lib/snp125Ui.c
index 407e9af..e30e03a 100644
--- src/hg/lib/snp125Ui.c
+++ src/hg/lib/snp125Ui.c
@@ -274,31 +274,31 @@
     "red",    // coding-nonsynon
     "blue",   // untranslated
     "black",  // intron
     "red",    // splice-site
     "black",  // cds-reference
 };
 
 /* NCBI has added some new, more specific function types that map onto 
  * pre-existing simpler function classes.  This mapping is an array of 
  * arrays, each of which has the simpler type (from snp125FuncDataName
  * above) followed by more specific subtypes, if any.  All arrays are
  * NULL-terminated. */
 static char *locusSyn[] =
     {"locus",		"gene-segment", "near-gene-3", "near-gene-5", NULL};
 static char *nonsynonSyn[] =
-    {"coding-nonsynon",	"nonsense", "missense", "frameshift", "cds-indel",
+    {"coding-nonsynon",	"nonsense", "missense", "frameshift", "stop-loss", "cds-indel",
      "coding-synonymy-unknown", NULL};
 static char *untranslatedSyn[] =
     {"untranslated",	"untranslated-3", "untranslated-5", NULL};
 static char *spliceSyn[] =
     {"splice-site",	"splice-3", "splice-5", NULL};
 static char *cdsRefSyn[] =
     {"cds-reference",	"coding",
      NULL};
 char **snp125FuncDataSynonyms[] = {
     locusSyn,
     nonsynonSyn,
     untranslatedSyn,
     spliceSyn,
     cdsRefSyn,
     NULL