c0c91a79ea88b69f8863ace5a7f3f19dea4528ba
wong
  Mon Jan 9 00:07:26 2012 -0800
no more missed duplicated comments
diff --git python/lib/ucscgenomics/ucscUtils.py python/lib/ucscgenomics/ucscUtils.py
index c540fe2..b155e04 100644
--- python/lib/ucscgenomics/ucscUtils.py
+++ python/lib/ucscgenomics/ucscUtils.py
@@ -111,22 +111,26 @@
         elif align1[i] != align2[i]:
             consensus.append(align1[i])
             consensus.append(align2[i])
 
     before = list()
     if before_i != 0:
         before.extend(list1[0:before_i])
     if before_j != 0:
         before.extend(list2[0:before_j])
     if after_i < len(list1):
         consensus.extend(list1[after_i:])
     if after_j < len(list2):
         consensus.extend(list2[after_j:])
     before.extend(consensus)
     setcon = list()
+    p = re.compile('^#')
     for i in before:
+        if p.match(i):
+            setcon.append(i)
+            continue
         if i in setcon:
             continue
         else:
             setcon.append(i)
     
     return setcon