File Changes for angie

v262_preview to v262_preview2 (2012-01-10 to 2012-01-17) v262

• src/hg/hgTables/vcf.c
  • lines changed 5, context: html, text, full: html, text
    Bug #6529 (VCF internal rep doesn't do missing data): add flags for missingdata values to vcfInfoElement, so we know the difference between "0" and ".". This applies to both INFO column values and genotype (FORMAT) values. Also, vcfGenotype's hapIxA and hapIxB are now signed, with negative values indicating missing data. User reported bug in MLQ #6462.
• src/hg/hgTracks/vcfTrack.c
  • lines changed 17, context: html, text, full: html, text
    Bug #6529 (VCF internal rep doesn't do missing data): add flags for missingdata values to vcfInfoElement, so we know the difference between "0" and ".". This applies to both INFO column values and genotype (FORMAT) values. Also, vcfGenotype's hapIxA and hapIxB are now signed, with negative values indicating missing data. User reported bug in MLQ #6462.
• src/hg/hgc/vcfClick.c
  • lines changed 15, context: html, text, full: html, text
    Bug #6529 (VCF internal rep doesn't do missing data): add flags for missingdata values to vcfInfoElement, so we know the difference between "0" and ".". This applies to both INFO column values and genotype (FORMAT) values. Also, vcfGenotype's hapIxA and hapIxB are now signed, with negative values indicating missing data. User reported bug in MLQ #6462.
• src/hg/lib/pgSnp.c
  • lines changed 9, context: html, text, full: html, text
    Bug #6529 (VCF internal rep doesn't do missing data): add flags for missingdata values to vcfInfoElement, so we know the difference between "0" and ".". This applies to both INFO column values and genotype (FORMAT) values. Also, vcfGenotype's hapIxA and hapIxB are now signed, with negative values indicating missing data. User reported bug in MLQ #6462.
• src/inc/vcf.h
  • lines changed 5, context: html, text, full: html, text
    Bug #6529 (VCF internal rep doesn't do missing data): add flags for missingdata values to vcfInfoElement, so we know the difference between "0" and ".". This applies to both INFO column values and genotype (FORMAT) values. Also, vcfGenotype's hapIxA and hapIxB are now signed, with negative values indicating missing data. User reported bug in MLQ #6462.
• src/lib/vcf.c
  • lines changed 14, context: html, text, full: html, text
    Bug #6529 (VCF internal rep doesn't do missing data): add flags for missingdata values to vcfInfoElement, so we know the difference between "0" and ".". This applies to both INFO column values and genotype (FORMAT) values. Also, vcfGenotype's hapIxA and hapIxB are now signed, with negative values indicating missing data. User reported bug in MLQ #6462.