ceb9f206dd571c1720e76bbfc5dddacf63c26d06 rhead Fri Jan 13 15:33:01 2012 -0800 Added &hgta_group=allTables per Angie. We were seeing a problem when this script was run from checkTrackUiLinks.csh that was caused by the url specifying a table but not a group and track. This fix gets around the problem by selecting adding the all tables parameter instead. diff --git src/utils/qa/getField.csh src/utils/qa/getField.csh index 36499bf..0fdef7e 100755 --- src/utils/qa/getField.csh +++ src/utils/qa/getField.csh @@ -1,56 +1,56 @@ #!/bin/tcsh source `which qaConfig.csh` ################################ # # 01-26-07 # Robert Kuhn # # gets a column of table data from any node using wget # ################################ set db="" set table="" set field="" set machine="hgw1" if ( $#argv < 3 || $#argv > 4 ) then echo echo " gets a column of table data from any node using wget" echo echo " usage: database table field [machine]" echo " (defaults to hgw1)" echo exit else set db=$argv[1] set table=$argv[2] set field=$argv[3] endif if ( "$HOST" != "hgwdev" ) then echo "\n error: you must run this script on dev!\n" exit 1 endif if ( 4 == $#argv ) then set machine=$argv[4] endif set url1="http://" # $machine = hgwdev-kuhn set url2=".cse.ucsc.edu/cgi-bin/hgTables?db=" # $db = hg17 set url3="&hgta_outputType=selectedFields&hgta_regionType=genome&hgta_table=" # $table = trackDb set url4="&outputType=Tab-separated%2C+Choose+fields...&origPhase=Get+results" -set url5="&field_tableName=on" +set url5="&hgta_group=allTables&field_tableName=on" set url6="&hgta_fs.check.$db.$table.$field=1&hgta_database=$db" set url7="&hgta_fieldSelectTable=$db.$table" set url8="&phase=Get+these+fields&hgta_doPrintSelectedFields=get+output" set url="$url1$machine$url2$db$url3$table$url4$url5$url6$url7$url8" wget -q -O /dev/stdout "$url" | sed -e "1d"